PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53458.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Nin-like | ||||||||
Protein Properties | Length: 896aa MW: 99115.6 Da PI: 5.7663 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.7 | 2e-27 | 582 | 632 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ MLOC_53458.5 582 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 632 689**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.688 | 571 | 652 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.9E-25 | 584 | 632 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.5E-23 | 795 | 889 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.0E-23 | 802 | 885 | No hit | No description |
PROSITE profile | PS51745 | 23.291 | 804 | 886 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.6E-24 | 804 | 886 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.50E-38 | 805 | 885 | No hit | No description |
Pfam | PF00564 | 5.1E-17 | 805 | 885 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence Send to blast |
MEHPATRSDD GGMRGADMDE LDLMEEFLLA SPGPDFPEFL HPGGAASPSP FSPLFDLGST 60 ITTAPAGGGD GDDDGSRRAW LIQPQEAPVS VKERLGRALQ GIASRSRGAA GELLVQVWVP 120 TRIGDRQVLT TCGQPFWVGR RSDRLESYRT VSVKYQFSAD EAACAELGLP GRVFVGRVPE 180 WTPDVRLFTD NEYPRVRYAQ HFDIRGSVAM PVFERRTGAC LGVVELVMTT QKINYNAEID 240 NICNALKEVD LRGSDVSSDP RAQVVDASYR AIVPELAHVL RAVCETHKLP LAQTWIPCVC 300 QAKRASRHSD EKYKYCVSTV DEACYVRDPA MNGFHQACSE HHLFRGEGVV GTALGTNEPC 360 FSPDITAYSK VQYPLSHYAK LFGLRAAVAI RLRSVKTGSM DLILEFFLPN NCITSEEQGA 420 MLTSLSNTIQ QASCTLRVVG VKELANDGSP ETSSPTPPEV CDKPTEILDE LSSGLNIPAR 480 TTSVDASEEV SSWIASLVDV QNNGAQGETD CGLPFGFRKQ EDEGFSVTAG WPTSPVLEPE 540 DKSFFPGFKK QEEYEVKGSP FSSDRSLSNS DKAIEKRRTK IEKTVSLQEL RKHFAGSLKE 600 AAKNLGVCPT TLKRICRHHG IDRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVRLSSLYE 660 NFTKTTWSER ELQGDLSCPA SEQKVQLEPS VPDRQCESRF SPHTSGSNSL SPTYSQSSNS 720 SLGCSSDPKP QQQQSSAPQL AVKQEFFMEE NQSSTQMKAA SHDELQLFTE EKPVTLYRSQ 780 SHMLFSEHKP VENMSSMQEA KPDSLKIKAM YGEERCIFRL QPSWGFEKLK EEIAKRFGIS 840 QEIYHLKYLD DESEWVLLTC DADLLECIDV YKASSAKTVR ISVNPTVQPV LRGSFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53458.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252975 | 0.0 | AK252975.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176g07, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164886.1 | 0.0 | protein NLP1-like | ||||
Swissprot | Q10S83 | 0.0 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | M0WPF8 | 0.0 | M0WPF8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_53458.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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