PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53458.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 566aa    MW: 62847.7 Da    PI: 6.1723
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53458.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.51.1e-27252302252
        RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++
  MLOC_53458.3 252 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 302
                   689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.688241322IPR003035RWP-RK domain
PfamPF020422.2E-25254302IPR003035RWP-RK domain
SuperFamilySSF542774.25E-23465559No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-23472555No hitNo description
PROSITE profilePS5174523.291474556IPR000270PB1 domain
SMARTSM006664.6E-24474556IPR000270PB1 domain
PfamPF005642.7E-17475555IPR000270PB1 domain
CDDcd064071.61E-39475555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MNGFHQACSE HHLFRGEGVV GTALGTNEPC FSPDITAYSK VQYPLSHYAK LFGLRAAVAI  60
RLRSVKTGSM DLILEFFLPN NCITSEEQGA MLTSLSNTIQ QASCTLRVVG VKELANDGSP  120
ETSSPTPPEV CDKPTEILDE LSSGLNIPAR TTSVDASEEV SSWIASLVDV QNNGAQGETD  180
CGLPFGFRKQ EDEGFSVTAG WPTSPVLEPE DKSFFPGFKK QEEYEVKGSP FSSDRSLSNS  240
DKAIEKRRTK IEKTVSLQEL RKHFAGSLKE AAKNLGVCPT TLKRICRHHG IDRWPSRKIK  300
KVGHSLKKLQ MVIDSVHGAE GTVRLSSLYE NFTKTTWSER ELQGDLSCPA SEQKVQLEPS  360
VPDRQCESRF SPHTSGSNSL SPTYSQSSNS SLGCSSDPKP QQQQSSAPQL AVKQEFFMEE  420
NQSSTQMKAA SHDELQLFTE EKPVTLYRSQ SHMLFSEHKP VENMSSMQEA KPDSLKIKAM  480
YGEERCIFRL QPSWGFEKLK EEIAKRFGIS QEIYHLKYLD DESEWVLLTC DADLLECIDV  540
YKASSAKTVR ISVNPTVQPV LRGSFG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53458.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529750.0AK252975.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176g07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164886.10.0protein NLP1-like
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLM0WPF80.0M0WPF8_HORVV; Uncharacterized protein
STRINGMLOC_53458.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.11e-111Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]