PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53458.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 896aa MW: 99115.6 Da PI: 5.7663

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53458.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.7	2e-27	582	632	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ MLOC_53458.1 582 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 632 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.688	571	652	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-25	584	632	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-23	795	889	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-23	802	885	No hit	No description
PROSITE profile	PS51745	23.291	804	886	IPR000270	PB1 domain
SMART	SM00666	4.6E-24	804	886	IPR000270	PB1 domain
CDD	cd06407	1.50E-38	805	885	No hit	No description
Pfam	PF00564	5.1E-17	805	885	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEHPATRSDD GGMRGADMDE LDLMEEFLLA SPGPDFPEFL HPGGAASPSP FSPLFDLGST 60 ITTAPAGGGD GDDDGSRRAW LIQPQEAPVS VKERLGRALQ GIASRSRGAA GELLVQVWVP 120 TRIGDRQVLT TCGQPFWVGR RSDRLESYRT VSVKYQFSAD EAACAELGLP GRVFVGRVPE 180 WTPDVRLFTD NEYPRVRYAQ HFDIRGSVAM PVFERRTGAC LGVVELVMTT QKINYNAEID 240 NICNALKEVD LRGSDVSSDP RAQVVDASYR AIVPELAHVL RAVCETHKLP LAQTWIPCVC 300 QAKRASRHSD EKYKYCVSTV DEACYVRDPA MNGFHQACSE HHLFRGEGVV GTALGTNEPC 360 FSPDITAYSK VQYPLSHYAK LFGLRAAVAI RLRSVKTGSM DLILEFFLPN NCITSEEQGA 420 MLTSLSNTIQ QASCTLRVVG VKELANDGSP ETSSPTPPEV CDKPTEILDE LSSGLNIPAR 480 TTSVDASEEV SSWIASLVDV QNNGAQGETD CGLPFGFRKQ EDEGFSVTAG WPTSPVLEPE 540 DKSFFPGFKK QEEYEVKGSP FSSDRSLSNS DKAIEKRRTK IEKTVSLQEL RKHFAGSLKE 600 AAKNLGVCPT TLKRICRHHG IDRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVRLSSLYE 660 NFTKTTWSER ELQGDLSCPA SEQKVQLEPS VPDRQCESRF SPHTSGSNSL SPTYSQSSNS 720 SLGCSSDPKP QQQQSSAPQL AVKQEFFMEE NQSSTQMKAA SHDELQLFTE EKPVTLYRSQ 780 SHMLFSEHKP VENMSSMQEA KPDSLKIKAM YGEERCIFRL QPSWGFEKLK EEIAKRFGIS 840 QEIYHLKYLD DESEWVLLTC DADLLECIDV YKASSAKTVR ISVNPTVQPV LRGSFG

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEHPATRSDD GGMRGADMDE LDLMEEFLLA SPGPDFPEFL HPGGAASPSP FSPLFDLGST  60
ITTAPAGGGD GDDDGSRRAW LIQPQEAPVS VKERLGRALQ GIASRSRGAA GELLVQVWVP  120
TRIGDRQVLT TCGQPFWVGR RSDRLESYRT VSVKYQFSAD EAACAELGLP GRVFVGRVPE  180
WTPDVRLFTD NEYPRVRYAQ HFDIRGSVAM PVFERRTGAC LGVVELVMTT QKINYNAEID  240
NICNALKEVD LRGSDVSSDP RAQVVDASYR AIVPELAHVL RAVCETHKLP LAQTWIPCVC  300
QAKRASRHSD EKYKYCVSTV DEACYVRDPA MNGFHQACSE HHLFRGEGVV GTALGTNEPC  360
FSPDITAYSK VQYPLSHYAK LFGLRAAVAI RLRSVKTGSM DLILEFFLPN NCITSEEQGA  420
MLTSLSNTIQ QASCTLRVVG VKELANDGSP ETSSPTPPEV CDKPTEILDE LSSGLNIPAR  480
TTSVDASEEV SSWIASLVDV QNNGAQGETD CGLPFGFRKQ EDEGFSVTAG WPTSPVLEPE  540
DKSFFPGFKK QEEYEVKGSP FSSDRSLSNS DKAIEKRRTK IEKTVSLQEL RKHFAGSLKE  600
AAKNLGVCPT TLKRICRHHG IDRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVRLSSLYE  660
NFTKTTWSER ELQGDLSCPA SEQKVQLEPS VPDRQCESRF SPHTSGSNSL SPTYSQSSNS  720
SLGCSSDPKP QQQQSSAPQL AVKQEFFMEE NQSSTQMKAA SHDELQLFTE EKPVTLYRSQ  780
SHMLFSEHKP VENMSSMQEA KPDSLKIKAM YGEERCIFRL QPSWGFEKLK EEIAKRFGIS  840
QEIYHLKYLD DESEWVLLTC DADLLECIDV YKASSAKTVR ISVNPTVQPV LRGSFG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53458.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252975	0.0	AK252975.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176g07, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164886.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	M0WPF8	0.0	M0WPF8_HORVV; Uncharacterized protein
STRING	MLOC_53458.5	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]