PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53442.10
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 902aa    MW: 99732.6 Da    PI: 7.6243
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53442.10genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-20116209290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     Y+ YA+++GF+vr++++++sk++ge+t+ +f Cs+eg+++++ +       ++  + +  rtgC+a+l+++++k  g ++v+ ++  HnH+l+
  MLOC_53442.10 116 LYRLYASKLGFNVRRRYTNRSKTSGEVTSCKFACSREGFKDHKPTGatarLPRAAVPAPDGRTGCNAHLTLRRSKpGGSFQVSGFQPRHNHPLF 209
                    79****************************************9988544444445588999**************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-17116209IPR004330FAR1 DNA binding domain
PfamPF105513.6E-16328407IPR018289MULE transposase domain
PROSITE profilePS509669.891597633IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-5608635IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MSSPSDSGHI PAPPHHPLPP FAPPPGPGPG PSPATHAASP PKPKSPIPTT APPPPPEPNA  60
FSRSSPADTT SAMAAASSRS SPAARPEDHQ SPPSIAEDCT PRMDMEFETE LQGYDLYRLY  120
ASKLGFNVRR RYTNRSKTSG EVTSCKFACS REGFKDHKPT GATARLPRAA VPAPDGRTGC  180
NAHLTLRRSK PGGSFQVSGF QPRHNHPLFA AHRSPHSPFH SPSNAAAVPI PDFVDGDATA  240
GAAWAEGEGP LRTRRQWEIK YGEAAALLNH LQQQSLADPA FHHAVQLDVE DKVANVFWVD  300
AKMVADYGHF GDAVAFDVVS RNSISLRHLA SFVGCNSFGE PVVFGLALMY DETCESFRWL  360
FQTFLRVMSG RAPKTFVSHQ DTVIAEALSL AMPATTTTHA ICTWHIRHTA KANIRQLSKG  420
DANFIEEFKA CVDGEYDVGA EFLAAWDSMI SKHELRDNAW LQKLFEEKQK WARPYAKGIF  480
SAGMEGTRLN ERLNSEVRGH LRAEVDIVLF LRHLQKVIVD RRHRELEMEY GSRQMMPYLK  540
IRAPVLTQAS EVYTSVIFQL FQEEYEEFQS AYIASRDESG PCREYVVSLV EKEDRRYMVY  600
GNPTEQTVSC SCGKFETVGF LCSHALKILD VMDIKYIPER YIMKRWTKYA RRLTSPPEVL  660
GQAVQAEESS EISSRYQHLC PKYVRLVARA SECEESSRVL DQFWGELGEK VEQILKKQTS  720
TSAPVTQPDV QNLKMALSSI TSGTESENVP DISSRAAAKT VKKKGQKSKN HPRNCIEKGP  780
TKKQRVHSEE PAVVQYGFTD APPAHSGNSM YQGLEAPPPN MSEMGSQIPA YKAYMGTDFS  840
KSMGTINYEG MRPGSSLGFI LLASEELGFV PCACHTSQAS NDSQHSQVRC GTIHKGSVET  900
IV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53442.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731260.0AK373126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021N16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316855.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
RefseqXP_024316858.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLF2EAF10.0F2EAF1_HORVV; Predicted protein
STRINGMLOC_53442.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-74far-red elongated hypocotyls 3