PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5337.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 228aa    MW: 23696 Da    PI: 10.0008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5337.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-083156227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 kt+lC+ f     Ck G++C+FaHg+
  MLOC_5337.3 31 KTRLCNKFNTAEGCKWGNKCHFAHGE 56
                 9***********************96 PP
2zf-CCCH37.92.9e-12194219127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC++f + G C +GdrC+FaHg+
  MLOC_5337.3 194 FKTKLCDNFNK-GSCTFGDRCHFAHGE 219
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-142761IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-82860IPR000571Zinc finger, CCCH-type
SMARTSM003560.42956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1122957IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-53156IPR000571Zinc finger, CCCH-type
SMARTSM003226.8E-1199169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.5E-15100168IPR004088K Homology domain, type 1
PROSITE profilePS5008414.99100164IPR004088K Homology domain, type 1
SuperFamilySSF547913.07E-15102194IPR004088K Homology domain, type 1
CDDcd001053.62E-14102165No hitNo description
PfamPF000131.5E-11102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-16192224IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8193219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9193223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.943193220IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10194219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTNLGGPAVS APPGRMPMGP GVPDGPPPSM KTRLCNKFNT AEGCKWGNKC HFAHGERELG  60
KPMLLNNSMA PPMGPRPNGH FQPPPMPGPD MVPPSTFGAS ATAKISVDAS LAGAIIGKGG  120
VNTKHISRMT GAKLAIRDNE ADPNHKNIEL EGSFDQVNHA SAMVKELILR IGGNAPPQAK  180
NAGRGPAGGG GSNFKTKLCD NFNKGSCTFG DRCHFAHGES ELRKSAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5337.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552310.0AK355231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1017N10.
GenBankAK3566640.0AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159826.11e-151zinc finger CCCH domain-containing protein 44-like isoform X1
RefseqXP_020159827.11e-151zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-127C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLF2CYF91e-164F2CYF9_HORVV; Predicted protein
STRINGMLOC_5337.21e-165(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-56C3H family protein