PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53364.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 636aa    MW: 70233.9 Da    PI: 5.3752
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53364.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-093984351954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  MLOC_53364.3 398 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 435
                   664559******************************88 PP
2BELL120.19.7e-39261332172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   e+qelq+k akLl +l+eVd++Yk+y +q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcLkdai +q+
  MLOC_53364.3 261 EKQELQNKMAKLLAMLDEVDRKYKHYFHQMQIVVSSFDMIAGSGAAKPYTAVALQTISRHFRCLKDAINDQV 332
                   689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-53185330IPR006563POX domain
PfamPF075261.9E-49191328IPR006563POX domain
PROSITE profilePS5007112.357376439IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-28378451IPR009057Homeodomain-like
SMARTSM003891.6E-9379443IPR001356Homeobox domain
CDDcd000861.38E-12379440No hitNo description
SuperFamilySSF466892.91E-17380445IPR009057Homeodomain-like
PfamPF059201.0E-17396435IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MSNYYSSPGD ERDPQTMYSP ETGSASYPVP SALGNLLYSN NASSGPYTEF SGIIQPQQNF  60
MELHGHPSEH SSSREPNMVT SLAEQSSFAP VKDMRNEMLM HFMDGAHSGG GDLIHNDAHS  120
SAQLEFGLLN NPSSAIVPSA PGQGLSLSLN THILAPSYPY WSPKPDLLTT QSYQGDENGM  180
KNMQSEASRA IRNSKYLKAA QELLDEIVSV WKSIKQNAQK DKVEAGKMDG KDADEVLKSE  240
GVSSNPQESA ANAEAEISAA EKQELQNKMA KLLAMLDEVD RKYKHYFHQM QIVVSSFDMI  300
AGSGAAKPYT AVALQTISRH FRCLKDAIND QVNVIRKKLG EEDNSSGREG KLTRLRFIDQ  360
QLRQQRAFQQ YGMLQQNAWR PQRGLPENSV SILRAWLFEH FLHPYPKDSE KLMLARQTGL  420
TRSQISNWFI NARVRLWKPM IEDMYKEETG EAELDSNSSS DNVPRSKDKM ASCEDREDQK  480
CSMSQGQAYQ TSEFKANVGM VGLTGGPASF HNEASSDDGF MNLLLKDQRP GEADGGLLHG  540
DESARFMAYH LAELGGYQNS NVSLTLGLQH TENNLSAPNN THRPGFTVGG EGDIYNTTAA  600
HPGGGAAAAS PDYESTNQLD QRQQFEPSPL LHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16385442158Homeobox protein Meis1
4xrs_B2e-16385442158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53364.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652800.0AK365280.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149633.10.0BEL1-like homeodomain protein 7
RefseqXP_020149634.10.0BEL1-like homeodomain protein 7
RefseqXP_020149635.10.0BEL1-like homeodomain protein 7
RefseqXP_020149636.10.0BEL1-like homeodomain protein 7
RefseqXP_020149637.10.0BEL1-like homeodomain protein 7
RefseqXP_020149638.10.0BEL1-like homeodomain protein 7
RefseqXP_020149639.10.0BEL1-like homeodomain protein 7
TrEMBLM0WP320.0M0WP32_HORVV; Uncharacterized protein
STRINGMLOC_53364.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-115BEL1-like homeodomain 6