PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53202.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 671aa    MW: 72672 Da    PI: 7.4138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53202.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08576625147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E ellv+av++lG g+Wk + ++     + Rt  ++k++w ++
     MLOC_53202.1 576 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFsdnEERTYVDLKDKWKNL 625
                      678999*************************99**99**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.59E-7401473IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873406470IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.0E-4407473No hitNo description
CDDcd017690.008410475No hitNo description
PROSITE profilePS5129416.171571630IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-10572627IPR009057Homeodomain-like
SuperFamilySSF466891.45E-12573628IPR009057Homeodomain-like
SMARTSM007177.8E-9575628IPR001005SANT/Myb domain
PfamPF002498.0E-6576625IPR001005SANT/Myb domain
CDDcd116603.13E-15577627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST  60
ESDQDRAAAS HNSDRATAKS EQVDEAPQLN STALKNGCCG GYPVGCDGIC ASLVETSILK  120
TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAESLV EKKPDVFVEG SLVTCTKPSL  180
LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQVTPAITRS QVDGDATALH GSADTMDVDI  240
KPSVLNSESS SGVHLGGHDN GHKSSPFCPG QVQHAADIDN DEKPTRCVHP STSGSKGGYL  300
SYIGDCRTRR LFATRMRKAA RSKMCGELPK KGSKFCGKKT SATRRKAQMQ RMLKTKKVAE  360
CYSAQPSDEG ILTETSGTSC SRGGQDPTCA FESSQRKPCA SEGCNVKFII KSFNIPELSI  420
EVPENATVGS LKRIVMDAVT SKIEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGVKPDSIG  480
FTLECEAKQD SHPSGIAPEE MDSAGPSVVN PLTKIKFEQP FISCTLGDYP YEGATQVRPE  540
ICQAIVPYGA SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK  600
NVKNHAFSDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQGLLDRV LAAQAYWTVH  660
HAKRDEDEGR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A1e-415476593113Telomere binding protein-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53202.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733770.0AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194084.10.0telomere-binding protein 1-like
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLF2EB520.0F2EB52_HORVV; Predicted protein
STRINGMLOC_53202.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-53TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]