PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53077.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 563aa MW: 60775.1 Da PI: 5.068

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53077.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H MLOC_53077.1 64 KCAKCPREFCSSVALRRHTRVH 85 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	63	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAASASASGS GGQIQPLKIP DAVVALAQAA AKANNSSNSA AADATDKYLP GWPLFSPPKM 60 QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL 120 EGVTIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTASSR LPISSNELFI 180 MLDEASENTF LCTNAADAAC VQKFLFDGEV DKIATELKNV VACTSYILEQ KLVEAWSADK 240 AAEALRCQKL LVEEEDAAQK RQAELMERKR MKKLRQKEQR LKDLKDEYTT VQLPEVVDGG 300 TSSPGIQSLE AVSGPGLHEQ EDPQHLRWPA PVPSEDNGCD GEGASCGSGQ VMDTGAVFRE 360 QAMAAINLER VENLPQNSTV SASSTTASKH PSSVRHSRHR ELNVGAVSNK SKTWAWKVRT 420 DTEERCPKVE PDAHANQETA PNTDKNSQVL IGSISVAIED DSTCLQDSKD YTAPESHLNT 480 LNHPVAEAMQ PVSHDENGCE DTNAAEGHSP ASVVTDESCC GAEPAEGGGL RQGAVSSGQE 540 AAAFLSQRWK EAMAGDHVKL VLC

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAASASASGS GGQIQPLKIP DAVVALAQAA AKANNSSNSA AADATDKYLP GWPLFSPPKM  60
QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL  120
EGVTIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTASSR LPISSNELFI  180
MLDEASENTF LCTNAADAAC VQKFLFDGEV DKIATELKNV VACTSYILEQ KLVEAWSADK  240
AAEALRCQKL LVEEEDAAQK RQAELMERKR MKKLRQKEQR LKDLKDEYTT VQLPEVVDGG  300
TSSPGIQSLE AVSGPGLHEQ EDPQHLRWPA PVPSEDNGCD GEGASCGSGQ VMDTGAVFRE  360
QAMAAINLER VENLPQNSTV SASSTTASKH PSSVRHSRHR ELNVGAVSNK SKTWAWKVRT  420
DTEERCPKVE PDAHANQETA PNTDKNSQVL IGSISVAIED DSTCLQDSKD YTAPESHLNT  480
LNHPVAEAMQ PVSHDENGCE DTNAAEGHSP ASVVTDESCC GAEPAEGGGL RQGAVSSGQE  540
AAAFLSQRWK EAMAGDHVKL VLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	273	ERKRMKKL
2	271	281	KKLRQKEQRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355914	0.0	AK355914.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027M18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160651.1	0.0	uncharacterized protein LOC109745950
TrEMBL	A0A287MVH9	0.0	A0A287MVH9_HORVV; Uncharacterized protein
STRING	MLOC_53077.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	6e-84	C2H2-like zinc finger protein