PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52900.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 392aa    MW: 42333.8 Da    PI: 7.9684
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52900.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.5e-14127228171
      trihelix   1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                   +Wt+ +v++Li+++ + +++++  +                                +kk++W++vs++m e gf++sp+qC++k+++ n+ + +  
  MLOC_52900.2 127 KWTDAMVRLLIALVYNAGDDVEGVSaggkaaashphgkasasaaaahgghglqaaaqQKKGKWKSVSNAMLENGFSVSPQQCEDKFNDGNG-FHNYG 222
                   79999****999999666666643333445666677777777777778888888888******************************9876.44444 PP

      trihelix  66 egekkr 71 
                    ++k+r
  MLOC_52900.2 223 GHNKRR 228
                   444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-10125215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MERVDGGAAM GARGSPAGML GMEMNHLVHQ PQPQIHAASA FQQQAEHLHH GNGGGGGFQV  60
QHHQHQAMPV RQQHSQPSYA AYVAPPSRAV KAHEEEEMGN GVGNGGGVVQ QPGAGAGAAA  120
CLWTRMKWTD AMVRLLIALV YNAGDDVEGV SAGGKAAASH PHGKASASAA AAHGGHGLQA  180
AAQQKKGKWK SVSNAMLENG FSVSPQQCED KFNDGNGFHN YGGHNKRRRG ESSATTVGED  240
GEEDGNNKPA RRRSSTSAMQ QLQRELAAAA AAAGGDQQQL RQWMQRRALE VEKQQLEYEV  300
HEYALQKQRH KWEQFKASKE WDMESERLRI QRRRVDGQRM LMALQQKEFD LDIAEAYNYS  360
SSVDHLPGAQ TPPPAGLHQQ PGSSPSTTGH PN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163766.12e-93uncharacterized protein LOC109749193
TrEMBLA0A446PHM00.0A0A446PHM0_TRITD; Uncharacterized protein
STRINGMLOC_52900.11e-118(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-15sequence-specific DNA binding transcription factors