PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52900.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 544aa    MW: 58741.8 Da    PI: 6.8008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52900.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix651.6e-20127245186
      trihelix   1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                   +Wt+ +v++Li+++ + +++++  +                                +kk++W++vs++m e gf++sp+qC++k+++lnkryk++ 
  MLOC_52900.1 127 KWTDAMVRLLIALVYNAGDDVEGVSaggkaaashphgkasasaaaahgghglqaaaqQKKGKWKSVSNAMLENGFSVSPQQCEDKFNDLNKRYKRVV 223
                   799999999999999666666643333445666667777777777777888888888**************************************** PP

      trihelix  66 egekkr.tsessstcpyfdqle 86 
                   +  +++ +++++++ +++d + 
  MLOC_52900.1 224 DLLGRGkACRVVENPALLDAMA 245
                   ****996699999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.9E-17125270No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MERVDGGAAM GARGSPAGML GMEMNHLVHQ PQPQIHAASA FQQQAEHLHH GNGGGGGFQV  60
QHHQHQAMPV RQQHSQPSYA AYVAPPSRAV KAHEEEEMGN GVGNGGGVVQ QPGAGAGAAA  120
CLWTRMKWTD AMVRLLIALV YNAGDDVEGV SAGGKAAASH PHGKASASAA AAHGGHGLQA  180
AAQQKKGKWK SVSNAMLENG FSVSPQQCED KFNDLNKRYK RVVDLLGRGK ACRVVENPAL  240
LDAMAELTAK AKEEARKLLS SKHLFFREMC TYHNPPGAGA VASHGAEDGA DCFHHPRPAT  300
VPGAANSSAG PQAVAMVNSS TRSEGDSEDD VLSSKEAEEE EEDDYDLDDV EEKAQGTKRR  360
GGRVDDGNGF HNYGGHNKRR RGESSATTVG EDGEEDGNNK PARRRSSTSA MQQLQRELAA  420
AAAAAGGDQQ QLRQWMQRRA LEVEKQQLEY EVHEYALQKQ RHKWEQFKAS KEWDMESERL  480
RIQRRRVDGQ RMLMALQQKE FDLDIAEAYN YSSSVDHLPG AQTPPPAGLH QQPGSSPSTT  540
GHPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171378.10.0uncharacterized protein LOC109756958
TrEMBLA0A453E8D70.0A0A453E8D7_AEGTS; Uncharacterized protein
STRINGMLOC_52900.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.17e-47sequence-specific DNA binding transcription factors