PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52896.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 311aa    MW: 34109.7 Da    PI: 7.7253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52896.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++q G+g +W + ++++g++R++k+c++rw++yl
     MLOC_52896.3 14 KGPWSPEEDATLKSYIEQNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.65e-1270111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
     MLOC_52896.3  70 GFSDEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.373962IPR017930Myb domain
SuperFamilySSF466891.02E-2511109IPR009057Homeodomain-like
SMARTSM007174.4E-111364IPR001005SANT/Myb domain
PfamPF002491.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231569IPR009057Homeodomain-like
CDDcd001672.37E-81662No hitNo description
PROSITE profilePS5129421.7863117IPR017930Myb domain
SMARTSM007173.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2370117IPR009057Homeodomain-like
CDDcd001676.41E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIRHGG FSDEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QSRKDQRQHQ FGRQGANGGH KEEASEGSAG NNGVAAGAYN WHQHTMAMPP HPMPGSMVEG  180
NLIGEGVDES IRKLLFKLGG SSFAALPAPP CLPPPMYGEA PNFVAPSVHT APLNEGGIHC  240
SSVLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS PLVCPNTTVA SSSQGMQQYC  300
LLEEPVDLGL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52896.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648050.0AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156621.10.0myb-related protein Myb4-like
TrEMBLM0WMA90.0M0WMA9_HORVV; Uncharacterized protein
STRINGMLOC_52896.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-79myb domain protein 36