PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 24901.2 Da PI: 6.6201 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 5 | 29 | 20 | 46 |
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 G ++W+ Ia+ ++ gRt++++k++w++ MLOC_52896.1 5 G-RRWSIIAAQLP-GRTDNDIKNYWNT 29 4.45*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.872 | 1 | 35 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.71E-8 | 4 | 36 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 5 | 29 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 5 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.09E-6 | 6 | 31 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MPLVGRRWSI IAAQLPGRTD NDIKNYWNTR LKKKLFGKQS RKDQRQHQFG RQGANGGHKE 60 EASEGSAGNN GVAAGAYNWH QHTMAMPPHP MPGSMVEGNL IGEGVDESIR KLLFKLGGSS 120 FAALPAPPCL PPPMYGEAPN FVAPSVHTAP LNEGGIHCSS VLPALELDES FQFNQVKLDG 180 LECFFGMGDQ SMRWNEVSPL VCPNTTVASS SQGMQQYCLL EEPVDLGLQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52896.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364805 | 0.0 | AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156621.1 | 1e-157 | myb-related protein Myb4-like | ||||
TrEMBL | M0WMA9 | 1e-165 | M0WMA9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52896.3 | 1e-166 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 8e-17 | myb domain protein 84 |