PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_52732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 206aa MW: 24060.6 Da PI: 10.2415 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.3 | 6.7e-20 | 11 | 104 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +f+n+Y++ +GFsv++ + k++ +rn+eit+ t++C+k+gk++e + + + r++++ +t+ k l+++++ +g+wevt+++l+HnHel+p MLOC_52732.1 11 EFFNFYSHVAGFSVTTVAVKRTsskQRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSTVIAKTNYKVVLVLSEK-EGTWEVTRVNLDHNHELTP 104 6************98766665556689999**************9988775789999****************99.****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-19 | 11 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MRFKSKQEGQ EFFNFYSHVA GFSVTTVAVK RTSSKQRNNE ITQITMKCNK HGKTKEVEAE 60 SVVPIRKSTV IAKTNYKVVL VLSEKEGTWE VTRVNLDHNH ELTPNSRFFR SHKYMSDEEK 120 CLIRTLKRTN LETRRIMAIL AYLRGGLALL PYTKKHVTNY AGTINREVTN TDMMEVVRMF 180 NKKQVESPGF YYSFELDEEN KVRSIF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_52732.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148036.1 | 1e-114 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M0WLN7 | 1e-151 | M0WLN7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52732.1 | 1e-152 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23066 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-17 | FAR1-related sequence 5 |