PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20104.8 Da PI: 10.3581 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00073 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H MLOC_52500.2 58 FSCNYCLRKFFSSQALGGHQNAH 80 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.69E-6 | 54 | 85 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKRAPEAQER KLGNQGDEAG RADDNTPTPW LKLGIDALRS EAAKPPEAKS VATPQRTFSC 60 NYCLRKFFSS QALGGHQNAH KKERCAARRS RSFQQLMLRF PPTASFIQPM RASPHSTILT 120 AQGERAAVVV ARFHDGQVRN RMPFAVEEAT YLVWPGSFKT SLQEPMKQQE ENIDLSLHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146214.1 | 1e-121 | zinc finger protein 7-like | ||||
TrEMBL | M0WKW6 | 1e-131 | M0WKW6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52500.2 | 1e-132 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 9e-20 | zinc finger protein 7 |