PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52439.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 172aa    MW: 19381.7 Da    PI: 8.2263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52439.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
     MLOC_52439.7  2 TPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                     9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.61E-13143No hitNo description
PROSITE profilePS5129424.155147IPR017930Myb domain
SMARTSM007172.3E-11145IPR001005SANT/Myb domain
PfamPF002493.3E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-20244IPR009057Homeodomain-like
SuperFamilySSF466896.16E-13250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTPHEERLIL ELHARWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KRNVSPSSSS  60
SSVTYQSCQP QTPSIIGIGD QELHGGNSCI TSILKGTPGD MDGYLMDQIW MEIEAPSGVN  120
FHDGKDNSYS SPSGPPLTSP MWDYYSPESG WKMDEIKMAP QVGHSKGIGP SY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52439.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507730.0AK250773.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86c09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201689.11e-112myb-related protein MYBAS2-like isoform X3
RefseqXP_020201690.11e-112myb-related protein MYBAS2-like isoform X3
SwissprotQ4JL761e-78MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM0WKQ41e-125M0WKQ4_HORVV; Uncharacterized protein
TrEMBLM0WKQ51e-124M0WKQ5_HORVV; Uncharacterized protein
STRINGMLOC_52439.61e-125(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.17e-38myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]