PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 28999.4 Da PI: 9.3528 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg++Fs+ L H +H MLOC_52355.1 125 YECPGCGRVFSSYQALGGHRASH 147 99***********9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-11 | 124 | 149 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-6 | 124 | 147 | No hit | No description |
PROSITE profile | PS50157 | 10.429 | 125 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-6 | 201 | 228 | No hit | No description |
Pfam | PF13912 | 1.1E-10 | 206 | 228 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 206 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 206 | 233 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 208 | 228 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAAPPRRRRR SMRVAAPAPA PPPPVLSAFE KEQEDVALCL LMLSRDTTGG MRGSPAAPKQ 60 VHVPRNGYGY NSDDDSALFQ YGEANKTKNV AKSKKRRTSH YALNSSVSTK QRSEAAPPPP 120 KRTRYECPGC GRVFSSYQAL GGHRASHKRI NTSCSAPKAA AAAAAPEPSV DTYTSFGTLS 180 PSASPDSVAI GIGAANKKPA AEAEKFECPV CFRVFGSGQA LGGHKRSHVM ADTAFSSDGE 240 LYGSTSVTEE QEQGYPVAAA GSLDLNFPPA PSEEA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52355.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003840 | 6e-41 | AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10. | |||
GenBank | AP003915 | 6e-41 | AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03. | |||
GenBank | AP014963 | 6e-41 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 6e-41 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | CT836133 | 6e-41 | CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182857.1 | 1e-146 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A287DV46 | 0.0 | A0A287DV46_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52355.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-21 | C2H2-like zinc finger protein |