PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52355.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 275aa    MW: 28999.4 Da    PI: 9.3528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52355.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05125147123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+Cp Cg++Fs+   L  H  +H
  MLOC_52355.1 125 YECPGCGRVFSSYQALGGHRASH 147
                   99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-11124149IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6124147No hitNo description
PROSITE profilePS5015710.429125152IPR007087Zinc finger, C2H2
SMARTSM003550.054125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6201228No hitNo description
PfamPF139121.1E-10206228IPR007087Zinc finger, C2H2
SMARTSM003550.31206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681206233IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAPPRRRRR SMRVAAPAPA PPPPVLSAFE KEQEDVALCL LMLSRDTTGG MRGSPAAPKQ  60
VHVPRNGYGY NSDDDSALFQ YGEANKTKNV AKSKKRRTSH YALNSSVSTK QRSEAAPPPP  120
KRTRYECPGC GRVFSSYQAL GGHRASHKRI NTSCSAPKAA AAAAAPEPSV DTYTSFGTLS  180
PSASPDSVAI GIGAANKKPA AEAEKFECPV CFRVFGSGQA LGGHKRSHVM ADTAFSSDGE  240
LYGSTSVTEE QEQGYPVAAA GSLDLNFPPA PSEEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038406e-41AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039156e-41AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149636e-41AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126156e-41CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361336e-41CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182857.11e-146zinc finger protein ZAT9-like
TrEMBLA0A287DV460.0A0A287DV46_HORVV; Uncharacterized protein
STRINGMLOC_52355.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-21C2H2-like zinc finger protein