PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52315.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YA
Protein Properties Length: 213aa    MW: 22952.2 Da    PI: 8.4262
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52315.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.1e-32106162158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF
  MLOC_52315.2 106 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 162
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-35104165IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.934105165IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.2E-27107162IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23108130IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860110130IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23139162IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTSVADAVSG DHRADEQQQK QAAHGNQEEA PATSIGNQAM AATPSTDYVT PYGHQEACHA  60
MGQIAYPTID PYYGSLYAAY GGQPMMHPPM VGMHAAAIPL PTDAIEEPVY VNAKQYNAIL  120
RRRQSRAKAE SERKLIKGRK PYLHESRHQH ALKRARGAGG RFLNAKSDDN EEHSDSSSKD  180
KQNGVAPRSS NGQPSSSQSP KGATSADKTG NPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-22105178174NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52315.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3639340.0AK363934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186181.11e-141nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_020186182.11e-141nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLF2DJ661e-155F2DJ66_HORVV; Predicted protein
STRINGMLOC_52315.11e-154(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-40nuclear factor Y, subunit A7