PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 16872.2 Da PI: 7.4731 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.9 | 9e-35 | 27 | 119 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+ap+f++eq +++fa++hk+FGasn +kll +lp ++r++a+ ++ yeA+ar++dPvyG+v++i++l+ ++ l++ MLOC_52276.1 27 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFAAIHKVFGASNASKLLMSLPATDRREAAVTISYEAQARLHDPVYGCVAHIFALTCTVDGLHS 119 7*************************89********************************************************999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.722 | 26 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-33 | 27 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MELGTGLLDN GINIDQAPEA MTGFSSPCGA CKFLRRKCVS GCVFAPHFCH EQGAAHFAAI 60 HKVFGASNAS KLLMSLPATD RREAAVTISY EAQARLHDPV YGCVAHIFAL TCTVDGLHSA 120 VRRGISSPID QPVTSRTPAI AGGERDSTGR PNGSMGLAMG D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-30 | 23 | 121 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-30 | 23 | 121 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52276.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182029.1 | 8e-60 | LOB domain-containing protein 14-like | ||||
Swissprot | Q5UG13 | 3e-52 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A287MWE4 | 1e-111 | A0A287MWE4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52276.7 | 4e-68 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-52 | LBD family protein |
Publications ? help Back to Top | |||
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