PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28246.9 Da PI: 8.9295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 233 | 254 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F ++ +L+ H + H MLOC_52196.1 233 CPKCSKGFQDPVLLVEHVEReH 254 *****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 2.0E-9 | 62 | 122 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.57E-9 | 64 | 116 | No hit | No description |
Pfam | PF01428 | 3.4E-8 | 72 | 111 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.8 | 194 | 217 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 196 | 217 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.683 | 231 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 12 | 231 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 233 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MIVQVFCLQH RSYTSHKCPK ANNKDVTVVV CPLCAKGVRL NPNEDANITW ESHVNTDCDP 60 SNYQRATKKK KCPVPGCREA LTFSNTIMCK DCSKEHCLKH RFGPDHKCPG PRKPEPTFPF 120 SNMLRRSQKV EPRANSSSSS SSWWSSSLLN AASSFRSSAE AGMQKLSIAT SEAVQKAKDG 180 VTPSSSGSGS GLVEQCVQCP ARFSTVGALI EHAEKSHGNN SQPSRGKVTV DACPKCSKGF 240 QDPVLLVEHV EREHGGTSKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52196.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251347 | 0.0 | AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence. | |||
GenBank | AK360983 | 0.0 | AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19. | |||
GenBank | AK367174 | 0.0 | AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157729.1 | 1e-167 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 1e-138 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | M0WJV0 | 0.0 | M0WJV0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52196.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4763 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 4e-94 | C2H2 family protein |
Publications ? help Back to Top | |||
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