PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52114.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 354aa MW: 39446.4 Da PI: 8.3692

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52114.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.2	2.1e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl MLOC_52114.4 47 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.831	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-33	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-18	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-25	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-10	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	7.4E-26	147	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYHHQQQLQS HGQLLASRQT FPSERHLLLQ GGIIPGESGL ILSTDAKPRL KWTPELHDRF 60 VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNSRTAVGC 120 TVATEKQSEG NGSPVGHHLN TQTNKSMHIS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AHETLAKQNT GSGGLETAKM QLSELVSKVS TECFHNAFTS LGDNDGSVML 240 RRHTMQLADG SVDSCLTACE GSQRDQDILS ISLSAQKGKE IGGMAFDLQM KERGHEDLFL 300 NKLSNRPPNH QEGRERRDSL SMTYQATKLD LNMNDTNDGT QNGKKFDLNG FSWS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYHHQQQLQS HGQLLASRQT FPSERHLLLQ GGIIPGESGL ILSTDAKPRL KWTPELHDRF  60
VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNSRTAVGC  120
TVATEKQSEG NGSPVGHHLN TQTNKSMHIS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AHETLAKQNT GSGGLETAKM QLSELVSKVS TECFHNAFTS LGDNDGSVML  240
RRHTMQLADG SVDSCLTACE GSQRDQDILS ISLSAQKGKE IGGMAFDLQM KERGHEDLFL  300
NKLSNRPPNH QEGRERRDSL SMTYQATKLD LNMNDTNDGT QNGKKFDLNG FSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52114.4

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366967	0.0	AK366967.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190332.1	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-103	PHL9_ARATH; Myb-related protein 2
TrEMBL	F2DSU9	0.0	F2DSU9_HORVV; Predicted protein
STRING	MLOC_52114.7	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-104	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]