PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51932.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 836aa    MW: 92948.9 Da    PI: 6.2361
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51932.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23136237199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  MLOC_51932.2 136 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKN 228
                   99***********************9*****86555544..8************************************************..89999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  MLOC_51932.2 229 QLWLGIRRA 237
                   99*****97 PP
2Auxin_resp110.41.9e-36262345183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPra++seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW  S Wrs+k
  MLOC_51932.2 262 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 345
                   79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-48121265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40128251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-21135236No hitNo description
PfamPF023621.6E-21136237IPR003340B3 DNA binding domain
SMARTSM010198.2E-24136238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083136238IPR003340B3 DNA binding domain
PfamPF065071.2E-31262345IPR010525Auxin response factor
PfamPF023091.3E-7731824IPR033389AUX/IAA domain
SuperFamilySSF542772.09E-7732812No hitNo description
PROSITE profilePS5174524.037737821IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MSSSSGASLG GQPPPPPPAA PPEEEKKNLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE  60
QVAASTNKEV EGHIPNYPNL PPQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEQNDAY  120
LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD  180
IHDVEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT  240
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR  300
ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV  360
SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL MWLRGVAGDG GYQSMNFQSP  420
GIGSWGQQRL HPSLLSSDHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN  480
PLLQQQILQQ ASQQQAVSAE SQNIQTMLNS SAIQHQLQQL QQMQQVQQAQ QVQQAHIDQK  540
QKIQSDQSYH VPTSASLPSP TSLPSHLREK FGFSDPNVNS SSFTTSSSSD NMLESNFLQG  600
NSKAVDLSRF NQPVASDQQQ QQQQQQQQQQ QAWKQKFMGS QSLSFGGSGL LSSPTSKDGS  660
LESKIGSDVQ NQSLFSPQVD SSSLLYNMVP NMASNVADNS MSTIPSGSTY LQSPMYGCLD  720
DSSGIFQNTG ENDPTSRTFV KVYKSGSVGR SLDITRFSNY AELREELGQM FGIRGQLDDP  780
DRSGWQLVFV DRENDVLLLG DDPWESFVNS VWYIKILSPE DVHKLGKQGN DPRYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612536647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51932.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583610.0AK358361.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185201.10.0auxin response factor 12
RefseqXP_020185202.10.0auxin response factor 12
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A287JPZ70.0A0A287JPZ7_HORVV; Auxin response factor
STRINGMLOC_51932.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]