PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_5165.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 310aa MW: 34172.3 Da PI: 6.9187

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_5165.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2.1e-49	10	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF P+deelv++yL+ kv++++l+ + + evd++ +ePw+Lp +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ + s MLOC_5165.1 10 LPPGFRFYPSDEELVCHYLHGKVANQRLPGGAAgtMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKATGKDRVIRSPr 107 79***********************76643334***********87788999*********************************996 PP NAM 96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + vg++ktLvfy+grap+g+kt Wvmhe+r+ MLOC_5165.1 108 ssssrpgRAAIVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 147 55555444444*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-59	7	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.038	10	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	11	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRLPGG AAGTMVEVDL HVHEPWELPD 60 VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SRPGRAAIVG 120 MRKTLVFYRG RAPNGSKTCW VMHEFRIENP HSPPKEDWVL CRVFHKKKAD TEYAMDGEQE 180 IVGGMARSAA VVSGSNYVSS SSCHDPDQYH HSPAAALFPP LGAGGHHYQL TSCDNHHPLG 240 TAGVSLSDVD AFAGMPQLLN YDSIVDFSQQ LQGGGAAAGL RDGAGDQCGG PLMDLGLEVQ 300 EEHYNYNSLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
3ulx_A	1e-46	1	167	1	169	Stress-induced transcription factor NAC1
4dul_A	1e-46	1	169	4	168	NAC domain-containing protein 19
4dul_B	1e-46	1	169	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_5165.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364002	0.0	AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172962.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	2e-59	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	F2DJD4	0.0	F2DJD4_HORVV; Predicted protein
STRING	MLOC_5165.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-74	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]