PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_51502.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 385aa MW: 42628.2 Da PI: 6.5004

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51502.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.1e-06	257	276	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r n++ H+ MLOC_51502.1 257 FVCHVCNKSFNRYNNMQMHM 276 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-5	253	280	No hit	No description
PROSITE profile	PS50157	10.388	257	284	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-5	257	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	259	279	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50868	8.004	299	315	IPR003616	Post-SET domain
SuperFamily	SSF57667	9.01E-5	325	361	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MPFHSSFPSF HIPVFSTHAT KPPRSRELYI RCIFDIPPAL QGEPRPYYLL RSRSMGLRTC 60 GAMEGELVVA SPFFEWLKPP LASPSSSRAS SSMASGHRED RSSVPCLPLL RMLEEGKGAG 120 GDHEHPASAV KEEIMSGAAG VLGPGVDLNI GLPVGGSCDD DIMEEEGQEE DLDDGHDCDE 180 EEEEEEEEMD ELKPAHGGCK VEGEEKEEHG EPVVSAGGSN SVSMPEFGVV GAESGVPMSC 240 EYWIPTPAQI LVGPVQFVCH VCNKSFNRYN NMQMHMWGHG REYRKGPESL KGTQTVALLK 300 VPCYCCAAGC RNSVSHPRAR PLKDFRTLQT HYKRKHGARP FRCRRCAKPF AVKGDWRTHE 360 KNCGKRWFCA CGSDFKHKRS LNDHV

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MPFHSSFPSF HIPVFSTHAT KPPRSRELYI RCIFDIPPAL QGEPRPYYLL RSRSMGLRTC  60
GAMEGELVVA SPFFEWLKPP LASPSSSRAS SSMASGHRED RSSVPCLPLL RMLEEGKGAG  120
GDHEHPASAV KEEIMSGAAG VLGPGVDLNI GLPVGGSCDD DIMEEEGQEE DLDDGHDCDE  180
EEEEEEEEMD ELKPAHGGCK VEGEEKEEHG EPVVSAGGSN SVSMPEFGVV GAESGVPMSC  240
EYWIPTPAQI LVGPVQFVCH VCNKSFNRYN NMQMHMWGHG REYRKGPESL KGTQTVALLK  300
VPCYCCAAGC RNSVSHPRAR PLKDFRTLQT HYKRKHGARP FRCRRCAKPF AVKGDWRTHE  360
KNCGKRWFCA CGSDFKHKRS LNDHV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51502.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359222	0.0	AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182641.1	0.0	protein TRANSPARENT TESTA 1-like
Swissprot	Q8W030	2e-86	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	F2D5R2	0.0	F2D5R2_HORVV; Predicted protein
STRING	MLOC_51502.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	2e-87	WIP domain protein 4

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]