PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9891.03 Da PI: 7.3513 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 16 | 61 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ E + + +a + +G g W+++a mg ++++++++ ++q MLOC_51469.1 16 EWSKKENKMFEEALAYYGEGaqnLWEKVACAMGGTKSAEEVRRHFQ 61 7********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 9 | 64 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.6E-5 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.29E-11 | 15 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-5 | 16 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.72E-4 | 16 | 61 | No hit | No description |
Pfam | PF00249 | 2.3E-7 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSSGSSRSTS PSSDSEWSKK ENKMFEEALA YYGEGAQNLW EKVACAMGGT KSAEEVRRHF 60 QILVDDVKNI EYGRIPFPKY KTQGFWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 8 | 84 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361203 | 1e-110 | AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176359.1 | 1e-45 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-22 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | M0WH86 | 1e-58 | M0WH86_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51469.1 | 2e-59 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-21 | RAD-like 6 |