PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51469.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 87aa    MW: 9891.03 Da    PI: 7.3513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51469.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081661345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G g    W+++a  mg ++++++++ ++q
     MLOC_51469.1 16 EWSKKENKMFEEALAYYGEGaqnLWEKVACAMGGTKSAEEVRRHFQ 61
                     7********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.737964IPR017877Myb-like domain
SMARTSM007175.6E-51366IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-111571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-51670IPR009057Homeodomain-like
CDDcd001676.72E-41661No hitNo description
PfamPF002492.3E-71661IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGSSRSTS PSSDSEWSKK ENKMFEEALA YYGEGAQNLW EKVACAMGGT KSAEEVRRHF  60
QILVDDVKNI EYGRIPFPKY KTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-19884277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612031e-110AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.11e-45protein RADIALIS-like 3
SwissprotQ1A1736e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0WH861e-58M0WH86_HORVV; Uncharacterized protein
STRINGMLOC_51469.12e-59(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-21RAD-like 6