PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51405.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 17720.3 Da PI: 8.3484 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F++ L H r+H MLOC_51405.2 77 HRCSVCGKAFPSYQALGGHKRRH 99 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 75 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 77 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.7E-13 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAVDAVRDAA AAMPSPAVSE EEEELRCAEG WGKRKRPRRQ QQRAPSEEEH LALSLLMLAR 60 GHRDQQILRP SSPAQEHRCS VCGKAFPSYQ ALGGHKRRHY EGPIGGGGAT AVASRRFDLN 120 LPALPDIVVV TERERCVPVP ADEEEVLSPL AFKKPRLMIP A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51405.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354744 | 1e-157 | AK354744.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1010K21. | |||
GenBank | AK361062 | 1e-157 | AK361062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173392.1 | 5e-67 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 1e-18 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A446RUJ1 | 4e-73 | A0A446RUJ1_TRITD; Uncharacterized protein | ||||
STRING | MLOC_51405.1 | 2e-68 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 6e-17 | salt tolerance zinc finger |