PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51405.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 219aa    MW: 23261.3 Da    PI: 8.6212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51405.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000287799123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cgk F++   L  H  +H
  MLOC_51405.1 77 HRCSVCGKAFPSYQALGGHKASH 99
                  79**********99999998887 PP
2zf-C2H214.78.7e-05135157123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k+F++   L  H r+H
  MLOC_51405.1 135 HECSVCNKTFPTGQALGGHKRRH 157
                   78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.05577104IPR007087Zinc finger, C2H2
PfamPF139121.3E-1377101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-97799No hitNo description
SMARTSM003550.0137799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-9130157No hitNo description
PfamPF139123.2E-14134159IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723135157IPR007087Zinc finger, C2H2
SMARTSM003550.016135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAVDAVRDAA AAMPSPAVSE EEEELRCAEG WGKRKRPRRQ QQRAPSEEEH LALSLLMLAR  60
GHRDQQILRP SSPAQEHRCS VCGKAFPSYQ ALGGHKASHR PKPAPVAADE PAATTAASPA  120
ASSSTTSSGA GGKVHECSVC NKTFPTGQAL GGHKRRHYEG PIGGGGATAV ASRRFDLNLP  180
ALPDIVVVTE RERCVPVPAD EEEVLSPLAF KKPRLMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3610620.0AK361062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173392.11e-103zinc finger protein 1-like
SwissprotQ424307e-43ZFP1_WHEAT; Zinc finger protein 1
TrEMBLF2DAZ81e-156F2DAZ8_HORVV; Predicted protein
STRINGMLOC_51405.11e-157(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.24e-34zinc-finger protein 2