PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 519aa MW: 56991.6 Da PI: 6.7226 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.8 | 3.4e-16 | 411 | 449 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk MLOC_51353.1 411 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 449 689**********************************96 PP | |||||||
2 | TCR | 29.3 | 1.7e-09 | 496 | 517 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnCkks+ClkkYCeC++ MLOC_51353.1 496 RHKRGCNCKKSSCLKKYCECYQ 517 589******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.7E-17 | 410 | 451 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.715 | 411 | 519 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.4E-12 | 413 | 448 | IPR005172 | CRC domain |
SMART | SM01114 | 0.048 | 496 | 519 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-5 | 498 | 517 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MQDSPLFSFI DSLSPIEPLK SAYSGNGLQA YHQSLNITSV SSIFTSPHDN AHKESKKTKS 60 SFADYTENEL CMEDGTDKNK SSTSSTAVKL FACTSTITRE SHTMITCSVN ESIVDPPNGP 120 NDLPQPGRFD SGSPDHNTAP CHGVSVRSDL KQDKCPKLEA VQTTNNTMEK RKCLFSTDMQ 180 LQDGCQTSKE NQVMGCEWDD LVSVTSGELL AFDSSMDQHH TGVQLAVNNA ESCGYLLSKL 240 AGGAADISDS RTHPTTSNKA YYHEMVVGED KTENGQFFPE DKKTILSEEI QDNINEDNGC 300 IPLGCKVETQ QRGVRRRCLV FEAAGYSHRT VQKESVGDLS FSTCKGKSPA QNHRNPGKTP 360 PHVFRGGGLL DLQMDNDDCS IGGFLGNDHN SSQSSSPPKK RRKSDNGDDE SCKRCSCKKS 420 KCLKLYCECF AAGVYCSEPC SCQGCLNKPI HEEIVLSTRK HIEFRNPLAF APKVIRMSEA 480 GQEAQEDPKN TPASARHKRG CNCKKSSCLK KYCECYQVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-11 | 413 | 518 | 12 | 105 | Protein lin-54 homolog |
5fd3_B | 2e-11 | 413 | 518 | 12 | 105 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 397 | 403 | PKKRRKS |
2 | 398 | 402 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51353.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375097 | 0.0 | AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167196.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A287MZW1 | 0.0 | A0A287MZW1_HORVV; Uncharacterized protein | ||||
TrEMBL | M0WGX3 | 0.0 | M0WGX3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51353.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 3e-40 | TESMIN/TSO1-like CXC 2 |