PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51337.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 427aa MW: 48066.4 Da PI: 5.0434 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.2 | 3.3e-12 | 261 | 307 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT+eE++ ++ + k +G g+Wk I++++ +++t+ q+ s+ qk+ MLOC_51337.2 261 RKFWTKEEHKSFLYGLKVYGRGDWKNISKHFVTTKTPIQVSSHAQKF 307 678******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.209 | 256 | 312 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-15 | 258 | 312 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 259 | 313 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-13 | 260 | 310 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.1E-10 | 260 | 310 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-8 | 264 | 306 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-8 | 264 | 308 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDSIVNHGWT SSEVEEAWSL IARLNSNKIM YDDNDDKNKK HNYIVNSLHA LFPSKTMKQV 60 TNLYVDLAME MHMIQQREGT RGSPQNSFTF CDPANVNYVL PGEENHASST HGVYTMGGHV 120 NENFGVREEA TIMDNNGLSF GCAMEDTGIT VTDEAPHMVD NNKMEVLENN ISIDQPIFAP 180 HQWGFWTGEE HSMGDLVNEN YEVQEDKDTT MDDNGFSFRY ALEDTRITKT EEAPMMVDEN 240 KMVVLENNTS TNRPVVASHQ RKFWTKEEHK SFLYGLKVYG RGDWKNISKH FVTTKTPIQV 300 SSHAQKFFKR IQQKASSGTK RYSINDVGLH DNELLPANNS SSPQQALSFT GLNNGPSFKL 360 QAPTSSFTVM NNLAQCTPSI YNNQQVGQQP MWSEQQMMGS VAAVMDGVAN YVPDGQQGSA 420 YFYLGNV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51337.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167095.1 | 0.0 | uncharacterized protein LOC109752608 | ||||
TrEMBL | A0A3B6TAG6 | 0.0 | A0A3B6TAG6_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_51337.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 5e-21 | MYB_related family protein |