PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51325.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 228aa    MW: 23439.5 Da    PI: 7.1734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51325.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292104198
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++ +++l+q++a
  MLOC_51325.1   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTSNWDLCQAAA 98 
                   6*********************9999888899***************************************************************** PP

        DUF260  93 elallk 98 
                   +++l++
  MLOC_51325.1  99 DAVLRG 104
                   998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6251107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAADA VLRGDSLRSL SAVPAAFTDR  120
DMAGLYGSVG TNTGSSSSLH SSPENSTSAP AGKRSKNYCG AAAGQQVKLP GPVLPSCELD  180
LCLTPLSSPL AGGRRGGASD EYSTTTCCEE ASGDAAEAGA PALLNLFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666860.0AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.11e-150LOB domain-containing protein 39-like
TrEMBLF2DS181e-163F2DS18_HORVV; Predicted protein
STRINGMLOC_51325.11e-164(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-55LOB domain-containing protein 37