PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51314.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 289aa MW: 32078 Da PI: 7.2632 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.1 | 7.2e-29 | 39 | 133 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrksksk.kskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GF++r+s+ + +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH l+ MLOC_51314.9 39 DFYSLYARHAGFRIRISSRYcRSRRDNSIISRQIVCSKEGFREVRAKKevtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHLLS 133 6***************998835699*******************99999998889999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.6E-27 | 39 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEISSHEPSE AENLIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISSRYCR 60 SRRDNSIISR QIVCSKEGFR EVRAKKEVTD EGKTKRPRMI TRVGCKAMIV VKKMNSGKWM 120 VSKFEKEHNH LLSSSKLAPS TSNITSGDNA EFSAKSSAPN EAEVEGHTTD SLTVLYNHLC 180 QEAIKFAKEG SVTEEIYHVA MSALKEASEK VSQVKSCSQH GVSGSEGKHK VVQMKTMSAS 240 QCSDEARQKI TPSRLTMFQE STSNLVLIPA NLLTDSGLSN SDNNRPLSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51314.9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954630 | 3e-95 | EU954630.1 Zea mays clone 1474335 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176088.1 | 1e-145 | uncharacterized protein LOC109761678 | ||||
TrEMBL | A0A287PB60 | 0.0 | A0A287PB60_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51314.1 | 1e-180 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-29 | FAR1-related sequence 5 |