PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_51314.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 365aa MW: 40140.8 Da PI: 7.5785

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51314.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.4	1.4e-29	39	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GF++r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH l+ MLOC_51314.6 39 DFYSLYARHAGFRIRISRYCRSRRDNSIISRQIVCSKEGFREVRAKKevtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHLLS 132 6****************************************99999998889999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-27	39	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEISSHEPSE AENLIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYCRS 60 RRDNSIISRQ IVCSKEGFRE VRAKKEVTDE GKTKRPRMIT RVGCKAMIVV KKMNSGKWMV 120 SKFEKEHNHL LSSSKLAPST SNITSGDNAE FSAKSSAPNE AEVEGHTTDS LTVLYNHLCQ 180 EAIKFAKEGS VTEEIYHVAM SALKEASEKV SQVKSCSQHG VSGSEGKHKV VQMKTMSASQ 240 CSDEARQKIT PSRLTMFQES TSNLVLIPAN LLTDSGLSNS DNNRPLSCAF PASGGQGRHG 300 PECSYLHAKN RKVDSPEKYQ NSTSGRATQG NHATYHGPSE ETSVAIPAIP LTLYMPVSRN 360 SPGDS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEISSHEPSE AENLIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYCRS  60
RRDNSIISRQ IVCSKEGFRE VRAKKEVTDE GKTKRPRMIT RVGCKAMIVV KKMNSGKWMV  120
SKFEKEHNHL LSSSKLAPST SNITSGDNAE FSAKSSAPNE AEVEGHTTDS LTVLYNHLCQ  180
EAIKFAKEGS VTEEIYHVAM SALKEASEKV SQVKSCSQHG VSGSEGKHKV VQMKTMSASQ  240
CSDEARQKIT PSRLTMFQES TSNLVLIPAN LLTDSGLSNS DNNRPLSCAF PASGGQGRHG  300
PECSYLHAKN RKVDSPEKYQ NSTSGRATQG NHATYHGPSE ETSVAIPAIP LTLYMPVSRN  360
SPGDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51314.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954630	4e-95	EU954630.1 Zea mays clone 1474335 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	0.0	uncharacterized protein LOC109761678
TrEMBL	A0A287PB05	0.0	A0A287PB05_HORVV; Uncharacterized protein
STRING	MLOC_51314.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-30	FAR1-related sequence 5