PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_51314.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 504aa MW: 55926.8 Da PI: 8.6402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51314.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6e-27	39	129	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + ++++++r+ tr+gCka++++kk gkw+v+k+++ HnH MLOC_51314.1 39 DFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIGPGKWVVAKFVKTHNHG 129 6*****************************************9999999999**********************************6 PP
2	FAR1	88.9	7.2e-28	177	269	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH l+ MLOC_51314.1 177 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKevtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHLLS 269 9***************************************99999998889999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-24	39	129	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.5E-26	177	269	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MEISSHEPSE AENLIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS 60 RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK KIGPGKWVVA 120 KFVKTHNHGS VPPRKLDIRS AHQDLNPIEK PQSTEVDPVG EPVEGMEFDS EEAAKLFYIN 180 YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEVTDEGKT KRPRMITRVG 240 CKAMIVVKKM NSGKWMVSKF EKEHNHLLSS SKLAPSTSNI TSGDNAEFSA KSSAPNEAEV 300 EGHTTDSLTV LYNHLCQEAI KFAKEGSVTE EIYHVAMSAL KEASEKVSQV KSCSQHGVSG 360 SEGKHKVVQM KTMSASQCSD EARQKITPSR LTMFQESTSN LVLIPANLLT DSGLSNSDNN 420 RPLSCAFPAS GGQGRHGPEC SYLHAKNRKV DSPEKYQNST SGRATQGNHA TYHGPSEETS 480 VAIPAIPLTL YMPVSRNSPG DSAG

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MEISSHEPSE AENLIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS  60
RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK KIGPGKWVVA  120
KFVKTHNHGS VPPRKLDIRS AHQDLNPIEK PQSTEVDPVG EPVEGMEFDS EEAAKLFYIN  180
YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEVTDEGKT KRPRMITRVG  240
CKAMIVVKKM NSGKWMVSKF EKEHNHLLSS SKLAPSTSNI TSGDNAEFSA KSSAPNEAEV  300
EGHTTDSLTV LYNHLCQEAI KFAKEGSVTE EIYHVAMSAL KEASEKVSQV KSCSQHGVSG  360
SEGKHKVVQM KTMSASQCSD EARQKITPSR LTMFQESTSN LVLIPANLLT DSGLSNSDNN  420
RPLSCAFPAS GGQGRHGPEC SYLHAKNRKV DSPEKYQNST SGRATQGNHA TYHGPSEETS  480
VAIPAIPLTL YMPVSRNSPG DSAG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51314.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	0.0	uncharacterized protein LOC109761678
TrEMBL	M0WGS2	0.0	M0WGS2_HORVV; Uncharacterized protein
STRING	MLOC_51314.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-29	FAR1 family protein