PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51191.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HSF | ||||||||
Protein Properties | Length: 257aa MW: 28730.2 Da PI: 7.7669 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.2 | 1.3e-33 | 66 | 157 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sw gnsfvv+d + f+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+ + F +g+kell++i+ MLOC_51191.6 66 FLNKTYEVVDDHSTDTIVSWGVAGNSFVVWDAHAFSMVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKELLKTIR 153 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r++ MLOC_51191.6 154 RRRP 157 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.5E-55 | 62 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.6E-36 | 62 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-32 | 62 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.6E-30 | 66 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 66 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 105 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 117 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDPFHGIVKE EEFDFAGAAA DGYSPSSWGS SPSSWGSSQS SWVGGGALAE LPRPMDGLGE 60 AGPTPFLNKT YEVVDDHSTD TIVSWGVAGN SFVVWDAHAF SMVLLPRYFK HSNFSSFVRQ 120 LNTYGFRKVD PDRWEFAAEG FLRGQKELLK TIRRRRPQSS GTPGQQQQQQ GGVCLEVGHF 180 GHDGEVQQLK RDKGTLIAEV VKLRQEQQAT RVQMQAMEAR LAATEQKQQQ MTVFLARAMK 240 SPSFLQMLVE RQDQSRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-25 | 57 | 155 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-25 | 57 | 155 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-25 | 57 | 155 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51191.6 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357022 | 0.0 | AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17. | |||
GenBank | AK357855 | 0.0 | AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19. | |||
GenBank | AK358380 | 0.0 | AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04. | |||
GenBank | AK377082 | 0.0 | AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200656.1 | 1e-151 | heat stress transcription factor A-2a-like | ||||
Refseq | XP_020200657.1 | 1e-151 | heat stress transcription factor A-2a-like | ||||
Swissprot | Q84MN7 | 1e-115 | HFA2A_ORYSJ; Heat stress transcription factor A-2a | ||||
TrEMBL | A0A287SBC8 | 0.0 | A0A287SBC8_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287SBJ1 | 0.0 | A0A287SBJ1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51191.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 8e-90 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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