PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5109.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 793aa    MW: 90220.6 Da    PI: 8.1546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5109.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.3e-1625123299
                  EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  fkvl     ++ +rl +p++f+ ++        + + + +++ tl+ ++g++W v+l  +k +++++lt+GW +Fv +n L+e +f++F +d+++ f 
  MLOC_5109.2  25 FKVL--VGDFA-RRLEIPRDFLGHIpemglggsNVPAAPPVKATLKRSEGKTWAVEL--EKVDRGVFLTTGWPKFVVENALREYEFLLFGYDKKMHF- 116
                  5555..34444.4699******777***99987555568899***************..********************************998999. PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                   +v+vf +
  MLOC_5109.2 117 -MVSVFGR 123
                  .9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1920126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1920126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.22421124IPR003340B3 DNA binding domain
CDDcd100171.90E-1522121No hitNo description
SMARTSM010191.5E-1424124IPR003340B3 DNA binding domain
PfamPF023622.1E-1325123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MNMGGDRSAG FPGEEDEGRP RPRFFKVLVG DFARRLEIPR DFLGHIPEMG LGGSNVPAAP  60
PVKATLKRSE GKTWAVELEK VDRGVFLTTG WPKFVVENAL REYEFLLFGY DKKMHFMVSV  120
FGRNACEKAV RSSGIGAQAT TSLERKLPCD IFLTCKRGYT GDELMKTTNN PRRSHSLVMT  180
PDQSDTKIVP VRGSTQGNVH IPSQSFADIH LHEVDGLKDE LKTYLLSKVP MDDDKAKAIA  240
EVMRRLHVDR VTVDLFCATL CLYKWNSDAA AEVFNTCRGK PQIQNQFLKQ KLVLQFDFIK  300
RELRHFFPTG DDCSPQTHDS RKNSLVVPNV STQPQQYYLP AVKSKLVDDH ELCDLLYKQK  360
RRIVKWRPQR ISETPRRSPR LAHLKNSCGS TESALKEKPE VLESSLSSTT DRVEDRTGQA  420
HLLYEKPDRV SKGDNQHAIG ILGLFLIRTY ICLLTPYTAV KPICVFVGSL SLDFKRLKKT  480
LCESVLSEKP QHHQENEEKI DQGNNGEIFE EQVDRNAAET SESFMGRDCI DSSPPTKSEV  540
SSMRINELCL TWKPSVHTNS FENVLLHIQC NNFTKTITHV QGIIRGSPSD LHCSAIIEAV  600
VQKEILKWDS CLQDVDAQRV VIALLEHAKK IKEIHNFNME SRKEEFSTKL QDQLKWQLKE  660
LEGVCTSLEF DYKKATCDSN IAVSTSQEQK KKLQALQYEI KGLQQSMMME DEIQKLVRQV  720
AEHESLVQKS LMERVRVKTV LKSYAQILVE VKERLASNEL GLIDVDALVK IEMDNLRKEI  780
EISKGRLLNI IFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5109.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165473.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A287LHU30.0A0A287LHU3_HORVV; Uncharacterized protein
STRINGMLOC_5109.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-13B3 family protein