PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51032.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 381aa    MW: 42673.4 Da    PI: 8.7791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51032.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.2e-0682104123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ Cg +F+ + +Lk+H+++H
  MLOC_51032.8  82 HDCKECGARFKKPAHLKQHMQSH 104
                   56*******************99 PP
2zf-C2H219.52.6e-06110134123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   + C+   C+ s+srk++L+rH+ tH
  MLOC_51032.8 110 FACHvdGCPFSYSRKDHLNRHLLTH 134
                   78*********************99 PP
3zf-C2H219.72.2e-06176200123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   + Cp  +Cgk F+  s L++H  +H
  MLOC_51032.8 176 FICPeaNCGKAFKYASKLQKHEESH 200
                   78*******************9988 PP
4zf-C2H216.13.2e-05268291323
                   ET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                   C+  dC+ sFs ksnL++Hi+  H
  MLOC_51032.8 268 CSfkDCKHSFSKKSNLHKHIKAvH 291
                   8888****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.53052IPR015880Zinc finger, C2H2-like
SMARTSM003550.003782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.19182109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-583100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576676.7E-1294136No hitNo description
Gene3DG3DSA:3.30.160.604.5E-14101136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0018110134IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307110139IPR007087Zinc finger, C2H2
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-6137165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.36E-6138165No hitNo description
SMARTSM003550.015139164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-8170200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-5172202No hitNo description
PROSITE profilePS5015711.323176200IPR007087Zinc finger, C2H2
SMARTSM003550.0047176200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
SMARTSM003556.5208233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SMARTSM0035531236257IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5247288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.26E-7247304No hitNo description
SMARTSM003550.086266291IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.424266296IPR007087Zinc finger, C2H2
PROSITE patternPS000280268291IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4290319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8297323IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6297323IPR007087Zinc finger, C2H2
PROSITE patternPS000280299323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGEADPDGGG VLGATVTSAA AAPVRDIRRY KCEFCGVVRS KKRLIRDHVL EHHKDEAGGL  60
DEYDVGGGGG GGGGAPGKGI GHDCKECGAR FKKPAHLKQH MQSHSPERPF ACHVDGCPFS  120
YSRKDHLNRH LLTHEGKLFI CPVEGCNHKF SIKGNIQRHV QEFHKDGPQF GGKKEFICPE  180
ANCGKAFKYA SKLQKHEESH VKLDYTEVIC CEPGCMKTFT NVECLKAHNQ SCHQYVQCDT  240
CETKQLKKNF KRHQRMHEGS LVTERINCSF KDCKHSFSKK SNLHKHIKAV HEQSRPFTCG  300
FSGCGQKFSY KHVRDNHEKS SVHVLFESDF VEADEQLRPH PGGRKRKPIS VDTLMRKRVA  360
APDAPPAYSD GTEYLRWLLS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-188627019172PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-188627019172PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51032.8
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A3B5XU910.0A0A3B5XU91_WHEAT; Uncharacterized protein
STRINGMLOC_51032.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-116transcription factor IIIA