PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51032.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 19203.8 Da PI: 9.7125 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 53 | 76 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ dC+ sFs ksnL++Hi+ H MLOC_51032.7 53 CSfkDCKHSFSKKSNLHKHIKAvH 76 8888****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 31 | 21 | 42 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.42E-7 | 32 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-6 | 32 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.424 | 51 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.086 | 51 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 53 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 75 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.6 | 82 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 82 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MKTFTNVECL KAHNQSCHQY VQCDTCETKQ LKKNFKRHQR MHEGSLVTER INCSFKDCKH 60 SFSKKSNLHK HIKAVHEQSR PFTCGFSGCG QKFSYKHVRD NHEKSSVHVL FESDFVEADE 120 QLRPHPGGRK RKPISVDTLM RKRVAAPDAP PAYSDGTEYL RWLLSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51032.7 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372817 | 0.0 | AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149307.1 | 1e-112 | transcription factor IIIA-like | ||||
Refseq | XP_020149308.1 | 1e-112 | transcription factor IIIA-like | ||||
Refseq | XP_020149309.1 | 1e-112 | transcription factor IIIA-like | ||||
Refseq | XP_020149310.1 | 1e-112 | transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 1e-47 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | F2E9J2 | 1e-119 | F2E9J2_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_51032.8 | 1e-118 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 8e-51 | transcription factor IIIA |