PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_50966.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CO-like | ||||||||
Protein Properties | Length: 382aa MW: 41758.4 Da PI: 5.1434 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 7.1e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ MLOC_50966.4 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35 6***************************9954 PP | |||||||
2 | zf-B_box | 23.1 | 1.5e-07 | 47 | 85 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+++ ++++ C + + lC++C ++H g H MLOC_50966.4 47 LCDRCASQPAAVRCLEENISLCQNCDWNGH-GatslaagH 85 7****************************9.435555555 PP | |||||||
3 | CCT | 62.1 | 1.8e-21 | 325 | 368 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ MLOC_50966.4 325 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 368 6789*************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.1E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.31E-5 | 4 | 35 | No hit | No description |
PROSITE profile | PS50119 | 8.603 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00219 | 47 | 76 | No hit | No description |
SMART | SM00336 | 0.71 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.932 | 325 | 367 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.0E-16 | 325 | 367 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANSLSR RHMRTLLCDR CASQPAAVRC 60 LEENISLCQN CDWNGHGATS LAAGHLRQTI NCYSGCPSSE ELARIWSFDF DAPSAAAEPN 120 CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ 180 PAQSVSMAPK VPCVTDDDMF NDGSIYENFC VDDAGLTFEN YEELFGTPHI QTEQLFDDAG 240 IDSYFGMKEM PAADCNEQLK PMQPECSNAV SADSSLCVPA RQAISSISLS FSGFTGEGNA 300 GDHQDCGVSP WLHPGPEGSS ASGSRGSALS RYMEKKKRRK FDKKIRYASR KARADVRKRV 360 KGRFVKAGEA YDYDPLCDTR SY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 334 | 338 | KKKRR |
2 | 334 | 339 | KKKRRK |
3 | 335 | 339 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_50966.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252666 | 0.0 | AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173272.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like isoform X1 | ||||
Swissprot | Q9LUA9 | 1e-112 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | M0WFC0 | 0.0 | M0WFC0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_50966.9 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 2e-88 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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