PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50966.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family DBB
Protein Properties Length: 206aa    MW: 22617.2 Da    PI: 6.0523
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50966.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.1e-07434535
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                   C+ ++e++ +++C+++   lC +C  + H+
  MLOC_50966.1  4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHS 34
                  6***************************995 PP
2zf-B_box24.27.2e-084785537
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                   C+++ ++++   C + +  lC++C  ++H g       H
  MLOC_50966.1 47 LCDRCASQPAAVRCLEENISLCQNCDWNGH-GatslaagH 85
                  7****************************9.435555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
CDDcd000212.62E-5435No hitNo description
PROSITE profilePS501198.6034390IPR000315B-box-type zinc finger
CDDcd000210.00374776No hitNo description
SMARTSM003360.714890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANSLSR RHMRTLLCDR CASQPAAVRC  60
LEENISLCQN CDWNGHGATS LAAGHLRQTI NCYSGCPSSE ELARIWSFDF DAPSAAAEPN  120
CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ  180
PAQSVSMAPK VHYEYHISSQ VIYHHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7912440.0JQ791244.1 UNVERIFIED: Hordeum vulgare subsp. vulgare cultivar OWB-D N gene, partial sequence.
GenBankJQ7912450.0JQ791245.1 UNVERIFIED: Hordeum vulgare subsp. vulgare cultivar OWB-R N gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173272.11e-124zinc finger protein CONSTANS-LIKE 10-like isoform X1
SwissprotQ9LUA95e-57COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A287UM411e-137A0A287UM41_HORVV; Uncharacterized protein
TrEMBLA0A287UM471e-137A0A287UM47_HORVV; Uncharacterized protein
TrEMBLA0A287UM841e-137A0A287UM84_HORVV; Uncharacterized protein
TrEMBLA0A287UMJ01e-138A0A287UMJ0_HORVV; Uncharacterized protein
TrEMBLM0WFC01e-137M0WFC0_HORVV; Uncharacterized protein
STRINGMLOC_50966.91e-138(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-59B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]