PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50701.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 529aa    MW: 58732.4 Da    PI: 7.4365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50701.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-184894148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde +++ vk++G+  W+ Iar +  gR +kqc++rw+++l
     MLOC_50701.1 48 KGPWTQEEDETIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 94
                     79******************************.*************97 PP
2Myb_DNA-binding59.48.1e-19100142145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE++ lv+a++++G++ W+ Ia+ ++ gRt++++k++w+
     MLOC_50701.1 100 KEAWTLEEEQVLVNAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWN 142
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.2752342IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-142359IPR009057Homeodomain-like
SuperFamilySSF466897.1E-52552IPR009057Homeodomain-like
PROSITE profilePS5129429.1154398IPR017930Myb domain
SuperFamilySSF466891.05E-3045141IPR009057Homeodomain-like
SMARTSM007173.6E-164796IPR001005SANT/Myb domain
CDDcd001671.65E-145094No hitNo description
PfamPF139211.2E-1651110No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2560102IPR009057Homeodomain-like
PROSITE profilePS5129422.81499149IPR017930Myb domain
SMARTSM007172.5E-1699147IPR001005SANT/Myb domain
CDDcd001671.64E-13102142No hitNo description
Gene3DG3DSA:1.10.10.606.6E-23103149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLTLGTFFLK YCNLIEESVL YAAEFFPDRT EVQCLHRWQK VLNPELIKGP WTQEEDETII  60
QKVKEHGPTK WSVIARSLHG RIGKQCRERW HNHLDPQIRK EAWTLEEEQV LVNAHRLHGN  120
KWAEIAKLLP GRTDNSIKNH WNSSVRKRLD EYDTGAALPV PVHAAKVPPA DNYIDLNKEP  180
NVSLRNHSVI VSHSDPTHSP QVFSLKNIKG CSDFLSLSMP TAQPVTSCQA SVADDSAVAL  240
AIMGMKMDSA RDKGMGLNFV RQKGLQINLL NEKGLGNKLG PSGTAKPDVE TDNIGCEPTL  300
VKEAQSFGSL CYQIPKLEDT DLVRSPVLSR HHGSEHGVDG FQLPTGYATP SPTDGRKSDQ  360
LSVESILKSA AENFPGTPSI LRRRKRDKPT PSQDTDFKID TNSDGFDTPK GNCTTDSPRS  420
FKTASFLSLG RLDDQRLPSV GKIDVSPAYR LRSKRMAVLK TVEKHLDFSA DTMDTCDMVG  480
TLKSSCWNSE SINSISDISS VQDKRINGHM VGLETLTSDF AHTTKLDAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-622314933159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-622314933159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381388RRRKRDKP
2382387RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50701.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635120.0AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147038.10.0uncharacterized protein LOC109732249
SwissprotQ0JHU71e-173MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLM0WET40.0M0WET4_HORVV; Uncharacterized protein
STRINGMLOC_50701.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-73myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]