PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_50426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 236aa MW: 26168.9 Da PI: 6.6961 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 47.1 | 6.8e-15 | 49 | 138 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+ws +De+ +L +l ++++g+ p+ d a+++ + ++++ ++ +++l +K+ LK+++ +kk g+ skehd+ +++lsk++Wg MLOC_50426.1 49 AFSRIWSTDDEVRILEALAAHQKQHGTLPQPD--ALVDALAGKLDNRAyGSKELQSKVATLKRRYLALSKK---GEV--PSKEHDRRVLDLSKIVWG 138 699***********************887775..8999999999887516889****************99...555..5799*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.9E-20 | 50 | 138 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MLALKQAPEE EEEDESEEEA PPPKPVLALK QAPEGLKPPA AAETKKPAAF SRIWSTDDEV 60 RILEALAAHQ KQHGTLPQPD ALVDALAGKL DNRAYGSKEL QSKVATLKRR YLALSKKGEV 120 PSKEHDRRVL DLSKIVWGGG DMFTAAAASA KAAANDHTRK GFEEMCTLYP YLADQVKELD 180 AASPGIFKRQ FGMMDDDKAR SMDEKIKKQR VAQMKVELRR HDLAREVTKA IIDLVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_50426.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369153 | 0.0 | AK369153.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200172.1 | 1e-124 | splicing factor, arginine/serine-rich 19-like | ||||
TrEMBL | F2DZ33 | 1e-168 | F2DZ33_HORVV; Predicted protein | ||||
TrEMBL | M0WEG9 | 1e-170 | M0WEG9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_50426.1 | 1e-170 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 2e-08 | DNA-binding storekeeper protein-related transcriptional regulator |