PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50406.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 704aa    MW: 78250.4 Da    PI: 4.5992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50406.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-5291421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lp GfrFhPtdeelv +yLk k++g+  ++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk
  MLOC_50406.5   9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSK 105
                   699***********************988889***************96336677888**************************************9 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++ +g+kktLvf++grapkge+t W+mheyr 
  MLOC_50406.5 106 gekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                   76555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-583163IPR003441NAC domain
PROSITE profilePS5100556.9929163IPR003441NAC domain
PfamPF023651.2E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQVEKTER SIPEEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP CTIETLGAPV TRWLADRNGN  240
PGTDEANDVG MPFHRGVDES PKQADLSVGS LAHLIDSQTK NLGSHEFATV SAPMLPDDHL  300
DNLLLHLTHN SVEDFLNETI ADPDELSSTA CKVQYDSDNG IMQAQGDLLY DDPNWFGNFL  360
SDDTNPQPSG LYENAPLLPY GTNPDVLSMD SGDESLQDLF NSMDDSSWQN DVWSNGFGFN  420
PMHQQLQSTV HPNYIFSQQG IARRRLRLLD SLSDVNVESR ESMTRDEHED EESDIVTSKY  480
RSESVESSAD VDESESTGVT IMSRRRALTK SVPSDRDDAE STGITIMGRR SAPSSNAPSD  540
EADAEATGIN IVSRRTAPSS STDNSFTTEQ GTAVRRLRLQ SNLDAGSCSS VDGLSSCIIE  600
HGSENEGLEA EIDEHVDTNF LDDVGFAGNS HADEHMYMPD HEANSLTRLR KTAEKSDKEN  660
KQECGPQSHV RAPRKRGGFA ARMILPVLSV ALLVLVSVGV YGWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-47816419169NAC domain-containing protein 19
3swm_B5e-47816419169NAC domain-containing protein 19
3swm_C5e-47816419169NAC domain-containing protein 19
3swm_D5e-47816419169NAC domain-containing protein 19
3swp_A5e-47816419169NAC domain-containing protein 19
3swp_B5e-47816419169NAC domain-containing protein 19
3swp_C5e-47816419169NAC domain-containing protein 19
3swp_D5e-47816419169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50406.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659390.0AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181255.10.0protein NTM1-like 9 isoform X1
TrEMBLF2DPX10.0F2DPX1_HORVV; Predicted protein
STRINGMLOC_50406.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-70NAC 014