PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50406.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 370aa    MW: 41650.1 Da    PI: 5.1076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50406.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.3e-5391421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lp GfrFhPtdeelv +yLk k++g+  ++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk
  MLOC_50406.3   9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSK 105
                   699***********************988889***************96336677888**************************************9 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++ +g+kktLvf++grapkge+t W+mheyr 
  MLOC_50406.3 106 gekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                   76555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-593163IPR003441NAC domain
PROSITE profilePS5100556.9929163IPR003441NAC domain
PfamPF023653.8E-2810141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQVEKTER SIPEEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP CTIETLGAPV TRWLADRNGN  240
PGTDEANDVG MPFHRGVDES PKADLSVGSL AHLIDSQTKN LGSHEFATVS APMLPDDHLD  300
NLLLHLTHNS VEDFLNETIA DPDELSSTAC KVQYDSDNGI MQVIFIFCIC CICYDYCLPS  360
YICLFSVGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-48816416166NO APICAL MERISTEM PROTEIN
1ut4_B8e-48816416166NO APICAL MERISTEM PROTEIN
1ut7_A8e-48816416166NO APICAL MERISTEM PROTEIN
1ut7_B8e-48816416166NO APICAL MERISTEM PROTEIN
3swm_A9e-48816419169NAC domain-containing protein 19
3swm_B9e-48816419169NAC domain-containing protein 19
3swm_C9e-48816419169NAC domain-containing protein 19
3swm_D9e-48816419169NAC domain-containing protein 19
3swp_A9e-48816419169NAC domain-containing protein 19
3swp_B9e-48816419169NAC domain-containing protein 19
3swp_C9e-48816419169NAC domain-containing protein 19
3swp_D9e-48816419169NAC domain-containing protein 19
4dul_A8e-48816416166NAC domain-containing protein 19
4dul_B8e-48816416166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50406.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2497490.0AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181256.10.0protein NTM1-like 9 isoform X2
SwissprotB5X5703e-69NAC14_ARATH; NAC domain-containing protein 14
TrEMBLM0WEG50.0M0WEG5_HORVV; Predicted protein
STRINGMLOC_50406.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-72NAC 014