PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_50406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 703aa MW: 78122.3 Da PI: 4.5992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp GfrFhPtdeelv +yLk k++g+ ++ evi+e+d++k+ePwdLp k +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk MLOC_50406.1 9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSK 105 699***********************988889***************96336677888**************************************9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +g+kktLvf++grapkge+t W+mheyr MLOC_50406.1 106 gekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 76555556***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.992 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL 60 IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQVEKTER SIPEEMDRSG 180 YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP CTIETLGAPV TRWLADRNGN 240 PGTDEANDVG MPFHRGVDES PKADLSVGSL AHLIDSQTKN LGSHEFATVS APMLPDDHLD 300 NLLLHLTHNS VEDFLNETIA DPDELSSTAC KVQYDSDNGI MQAQGDLLYD DPNWFGNFLS 360 DDTNPQPSGL YENAPLLPYG TNPDVLSMDS GDESLQDLFN SMDDSSWQND VWSNGFGFNP 420 MHQQLQSTVH PNYIFSQQGI ARRRLRLLDS LSDVNVESRE SMTRDEHEDE ESDIVTSKYR 480 SESVESSADV DESESTGVTI MSRRRALTKS VPSDRDDAES TGITIMGRRS APSSNAPSDE 540 ADAEATGINI VSRRTAPSSS TDNSFTTEQG TAVRRLRLQS NLDAGSCSSV DGLSSCIIEH 600 GSENEGLEAE IDEHVDTNFL DDVGFAGNSH ADEHMYMPDH EANSLTRLRK TAEKSDKENK 660 QECGPQSHVR APRKRGGFAA RMILPVLSVA LLVLVSVGVY GWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_50406.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249749 | 0.0 | AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181256.1 | 0.0 | protein NTM1-like 9 isoform X2 | ||||
TrEMBL | M0WEG3 | 0.0 | M0WEG3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_50406.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 3e-70 | NAC 014 |