PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_498.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HSF | ||||||||
Protein Properties | Length: 372aa MW: 42116 Da PI: 4.7316 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.9 | 9.3e-35 | 56 | 147 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed+++++++sws+ gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ ik MLOC_498.9 56 FLTKTYDLVEDPATDQVVSWSRAGNSFVVWDPHVFADALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKMIK 143 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k MLOC_498.9 144 RRKP 147 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-38 | 52 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-35 | 52 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-60 | 52 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.0E-32 | 56 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 56 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 95 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-19 | 107 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDAAVPDGIV KEEEGLLLLH EERPPAAGPP QRQRQEEDGA LPRPMEGLHE AGPPPFLTKT 60 YDLVEDPATD QVVSWSRAGN SFVVWDPHVF ADALLPRLFK HSNFSSFVRQ LNTYGFRKVD 120 PDRWEFANEG FLRGQRHLLK MIKRRKPPSN APPSQQQALT SCLEVGEFGF EEEIDRLKRD 180 KNLLITEVVK LRQEQQATKD NVQAMENRLQ AAEQKQAQMM GFLARAMRNP LFFQQLVQRQ 240 DKRKELEDAI SKKRRRPIDN VPFYGSGVTT SQSEQLDSQF LFDSGVLSDP GTHRLENLAQ 300 NIQDLGQGKT DEGKKDEANG QVELNNEFWA ELFSDDFGDG DGSGLSELEG RRPEDIDELA 360 QQLGYLSSTS PL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 51 | 145 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-25 | 51 | 145 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 51 | 145 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 51 | 145 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 144 | LKMIKRR |
2 | 241 | 255 | KRKELEDAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_498.9 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358460 | 0.0 | AK358460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077C17. | |||
GenBank | AK363263 | 0.0 | AK363263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013N08. | |||
GenBank | HM446025 | 0.0 | HM446025.1 Hordeum vulgare subsp. vulgare heat shock factor A2c (HsfA2c) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147337.1 | 0.0 | heat stress transcription factor A-2c-like isoform X1 | ||||
Refseq | XP_020147338.1 | 0.0 | heat stress transcription factor A-2c-like isoform X1 | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | F2D3K2 | 0.0 | F2D3K2_HORVV; Heat shock factor A2c | ||||
STRING | MLOC_498.9 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-108 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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