PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4879.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-X1
Protein Properties Length: 899aa    MW: 99102.3 Da    PI: 8.5037
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4879.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.45.2e-07364383119
     zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                  CG+HkC + CH+GpC++ C+
  MLOC_4879.2 364 CGRHKCPERCHRGPCDVtCR 383
                  *****************9*7 PP
2zf-NF-X117.21.1e-05417434118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C++ C+ G+CppC
  MLOC_4879.2 417 CGRHACKRRCCVGDCPPC 434
                  ****************** PP
3zf-NF-X118.44.7e-06444463120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+HkC ++CH+G C pCp+
  MLOC_4879.2 444 CGNHKCLSPCHRGVCSPCPL 463
                  ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590104154IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.052104155IPR001841Zinc finger, RING-type
SMARTSM004380.008204222IPR000967Zinc finger, NF-X1-type
PfamPF014220.018205221IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-7247295No hitNo description
SMARTSM004380.025257276IPR000967Zinc finger, NF-X1-type
PfamPF014220.019259274IPR000967Zinc finger, NF-X1-type
CDDcd060083.75E-6300340No hitNo description
SMARTSM004380.047310329IPR000967Zinc finger, NF-X1-type
PfamPF014220.69312328IPR000967Zinc finger, NF-X1-type
CDDcd060083.04E-9354403No hitNo description
SMARTSM004380.0023364384IPR000967Zinc finger, NF-X1-type
PfamPF014224.5E-4364383IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-7407455No hitNo description
SMARTSM004380.013417436IPR000967Zinc finger, NF-X1-type
PfamPF014220.0023417434IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-10434482No hitNo description
SMARTSM004380.011444463IPR000967Zinc finger, NF-X1-type
PfamPF014222.0E-4444462IPR000967Zinc finger, NF-X1-type
SMARTSM0043825507522IPR000967Zinc finger, NF-X1-type
PfamPF014225.5511521IPR000967Zinc finger, NF-X1-type
SMARTSM00438140530575IPR000967Zinc finger, NF-X1-type
PfamPF0142219530539IPR000967Zinc finger, NF-X1-type
SMARTSM00438100612651IPR000967Zinc finger, NF-X1-type
PfamPF014221.1612622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.53664682IPR000967Zinc finger, NF-X1-type
PfamPF0142233664681IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44727748IPR000967Zinc finger, NF-X1-type
PfamPF014221729741IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MPSSYAAATA SSSRKLAPST SATAATRKPA PLPAPAPPPS NPSHVSDSDP SSYSSSGEET  60
DLSACDPATA SVLSTYLSVA GNGADLSKVG IFLNSAARRR SPPCLICLDP IRPSDPVWSC  120
SASCFALLHL PCIQSWAHQS ASAAPSPTWG CPKCRVAYPK SQTPTSYHCF CSKTEDPPAD  180
PWILPHSCGD VCGRRLNSNH DSGCEHTCLL LCHPGPCPPC PAVVPNARCF CGAHREPRRC  240
AHQRYSCKGK CNKRLSCELH RCPVDCHDGP CPPCAVQGNH KCECGETMVE RLCSERVFQC  300
KRECSGMLEC RKHRCERGCH GGKCGECPLR GRRTCPCGKK DYPRLECDVE AATCGSTCEK  360
VLGCGRHKCP ERCHRGPCDV TCRLVIKKSC RCGVLKKELP CHQDLTCERK CQRSRACGRH  420
ACKRRCCVGD CPPCAETCDR KLKCGNHKCL SPCHRGVCSP CPLMKTISCF CGKTYFEVPC  480
GTEKNQKPPK CSKRCNIDRL CRHKLDCRPH KCHYGACPPC KLICGEEFSC GHKCKERCHG  540
SIPPPNPEFT VKPMKKKMEK HIECTPGTPC PPCQEVVLVP CFGEHLGQER AIPCSKSRQF  600
PCQNLCGNLL HCGNHYCTKD CHVLEIPSDQ RKADAILSLS RKNTLAEPCE RCNLPCQRAR  660
DPPCSHPCPL RCHLSDCLPC KALVKRSCHC GAMTHAFECV YYNNLNAKQQ LKVRSCSGPC  720
HRKLPNCPHL CSEICHPGQC PSVDQCMKKV NVRCACNTLK KEWVCQDVLK EYRRSGRDPK  780
EVPKGQFGVG LLACGGDCLK KVNVSAAELH IRKVQETKNP AAEVANVPKR RKKRDRGAQE  840
PVQVSMWQQI KRCLVVIIAL AGLVVLGLVI WKGIYQISDW MNEMEEQKAR ERLLRAGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4879.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525650.0AK252565.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188359.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM0WCP20.0M0WCP2_HORVV; Uncharacterized protein
STRINGMLOC_4879.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors