PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_4830.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SBP

Protein Properties

Length: 498aa MW: 53856.8 Da PI: 6.505

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_4830.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	156	233	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ MLOC_4830.3 156 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 233 5**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.4E-34	149	218	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.291	154	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.89E-38	155	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-29	157	230	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDLEAARVGS QSRHLYGGGL GGELEQARRE KRVFGWDLND WSWDSERFVA TPVPAAAGNG 60 LSLNSSPSSS EEAGPEVARN GNVRVDSDKR KRVVVIHDDD NEKDDDPVGN SSNVLSLRLG 120 GGNSVAGGAA EDGGVNEEDR NGKRIRVQGG SSNGPACQVE GCCADLSAAK DYHRRHKVCE 180 MHAKANTAVV GNTVQRFCQQ CSRFHLLQEF DEGKRSCRRR LAGHNKRRRK TRPESAVGGA 240 PIEEKVSSYL LLSLLGICAN FNSDNAERVQ GQELLSNLWR NLGTVAKSLD PKELCKLLEA 300 CQNMQNGSNA GTSEAANALV NTAAAEAAGP SNSKAPFANG GQCGQSSSAV VPVQSNVPMV 360 ATTEIPACKL KNFDLNDTCN DMEGFEDGSN CPSWIRQDST QSPPQTSGNS DSTSAQSLSS 420 SNGDAQCRTD KIVFKLFEKV PSELPPILRS QILGWLSSSP TDIESYIRPG CIILTVYLRL 480 VESSWREVHF FHKHFMSW

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDLEAARVGS QSRHLYGGGL GGELEQARRE KRVFGWDLND WSWDSERFVA TPVPAAAGNG  60
LSLNSSPSSS EEAGPEVARN GNVRVDSDKR KRVVVIHDDD NEKDDDPVGN SSNVLSLRLG  120
GGNSVAGGAA EDGGVNEEDR NGKRIRVQGG SSNGPACQVE GCCADLSAAK DYHRRHKVCE  180
MHAKANTAVV GNTVQRFCQQ CSRFHLLQEF DEGKRSCRRR LAGHNKRRRK TRPESAVGGA  240
PIEEKVSSYL LLSLLGICAN FNSDNAERVQ GQELLSNLWR NLGTVAKSLD PKELCKLLEA  300
CQNMQNGSNA GTSEAANALV NTAAAEAAGP SNSKAPFANG GQCGQSSSAV VPVQSNVPMV  360
ATTEIPACKL KNFDLNDTCN DMEGFEDGSN CPSWIRQDST QSPPQTSGNS DSTSAQSLSS  420
SNGDAQCRTD KIVFKLFEKV PSELPPILRS QILGWLSSSP TDIESYIRPG CIILTVYLRL  480
VESSWREVHF FHKHFMSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	150	230	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_4830.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369869	0.0	AK369869.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100B11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169994.1	0.0	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	M0WC83	0.0	M0WC83_HORVV; Uncharacterized protein
STRING	MLOC_4830.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	6e-87	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]