PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_4747.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 354aa MW: 39306.9 Da PI: 6.5083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_4747.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.3e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+v+yL +++++ + ++ +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ + MLOC_4747.1 15 LPPGFRFHPTDEELIVHYLGRQAASMPSPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpAN 111 79***********************999.88***********8777899**********************************99888 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 e +g+kk Lvfy+g+ pkg+ktdW+mheyrl MLOC_4747.1 112 ESIGVKKALVFYRGKPPKGVKTDWIMHEYRL 142 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-64	5	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.629	15	170	IPR003441	NAC domain
Pfam	PF02365	3.0E-26	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MPMGSSSSSA AMPALPPGFR FHPTDEELIV HYLGRQAASM PSPVPIIAEV NIYKCNPWDL 60 PGKALFGENE WYFFSPRDRK YPNGARPNRA AGSGYWKATG TDKAILSTPA NESIGVKKAL 120 VFYRGKPPKG VKTDWIMHEY RLTAADNRAT KRRGSSMRLD DWVLCRIHKK CGNLPNFSSD 180 QEQEHEQESS TVEDSHNNHT VSSPKSEAFD GDGDGDDQLQ LQQFRPMAIA KSCSLTDLLN 240 TVDYAALSHL LLDGSAGAGA SSSDAGLDYQ LPPENPLIYS QPPWQQTLHY NNNNNGYVNH 300 DTIDVPQLTE ARLDDYGMKR KRSSGSLYCS QLQVPADQYS GMLIHPFLSQ QLHM

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MPMGSSSSSA AMPALPPGFR FHPTDEELIV HYLGRQAASM PSPVPIIAEV NIYKCNPWDL  60
PGKALFGENE WYFFSPRDRK YPNGARPNRA AGSGYWKATG TDKAILSTPA NESIGVKKAL  120
VFYRGKPPKG VKTDWIMHEY RLTAADNRAT KRRGSSMRLD DWVLCRIHKK CGNLPNFSSD  180
QEQEHEQESS TVEDSHNNHT VSSPKSEAFD GDGDGDDQLQ LQQFRPMAIA KSCSLTDLLN  240
TVDYAALSHL LLDGSAGAGA SSSDAGLDYQ LPPENPLIYS QPPWQQTLHY NNNNNGYVNH  300
DTIDVPQLTE ARLDDYGMKR KRSSGSLYCS QLQVPADQYS GMLIHPFLSQ QLHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-74	1	170	1	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_4747.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819765	0.0	FR819765.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC027 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166974.1	0.0	NAC transcription factor 29-like
Swissprot	K4BWV2	3e-84	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A287R0Z1	0.0	A0A287R0Z1_HORVV; Uncharacterized protein
TrEMBL	A0A287R1E3	0.0	A0A287R1E3_HORVV; Uncharacterized protein
STRING	MLOC_4747.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	7e-78	NAC domain containing protein 2

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]