PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_47091.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 420aa    MW: 45868.4 Da    PI: 5.9298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_47091.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.31.9e-2541145199
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+k  tpsd+++++rlv+pk +ae++     +++ ++  l +ed+ g+ W+++++y+++s+ yv+tkGW +Fv++  L +gD+v F++  g+  +++
  MLOC_47091.1  41 FEKMVTPSDTGTLNRLVIPKYHAEKCfpldASSNGNGLLLNFEDSAGKPWRFRYSYWNNSQCYVMTKGWAGFVRETLLGAGDTVFFSRGvGEaARGR 137
                   8999*************************9666678899************************************************6668899*** PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+v ++r+
  MLOC_47091.1 138 LFVDWRRR 145
                   *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-3334133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2439132IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-2040128No hitNo description
SMARTSM010194.8E-1641146IPR003340B3 DNA binding domain
PfamPF023621.6E-2341145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.11241146IPR003340B3 DNA binding domain
SuperFamilySSF511013.14E-33191337IPR001229Jacalin-like lectin domain
Gene3DG3DSA:2.100.10.301.6E-34192338IPR001229Jacalin-like lectin domain
PROSITE profilePS5175226.944192339IPR001229Jacalin-like lectin domain
SMARTSM009151.6E-4200339IPR001229Jacalin-like lectin domain
CDDcd096121.11E-30207337IPR033734Jacalin-like lectin domain, plant
PfamPF014195.3E-20214338IPR001229Jacalin-like lectin domain
SuperFamilySSF511016.02E-12352412IPR001229Jacalin-like lectin domain
Gene3DG3DSA:2.100.10.302.0E-9353410IPR001229Jacalin-like lectin domain
PROSITE profilePS517527.089353420IPR001229Jacalin-like lectin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEFTTITAST AADGRPWTPP LAADHEADEA AAAAVVKEYM FEKMVTPSDT GTLNRLVIPK  60
YHAEKCFPLD ASSNGNGLLL NFEDSAGKPW RFRYSYWNNS QCYVMTKGWA GFVRETLLGA  120
GDTVFFSRGV GEAARGRLFV DWRRRRGPDV VLSSPRQRGF TLLSVGNDGF AIACPDPHLE  180
GDGVKEVDKA YITKIGPWGG NRGIFNDINK SPLRLNSVTI RSGEVIYSLA FSYSDNYGKQ  240
HHAGPWGGCK DFSYGSFDTI QLGPSEFLTK VSGTIAFSSQ YSSNVITSVI FTTTARQYGP  300
FGGGVGIPFQ SPVTSNGSIV GFFAHAEWVV ESIGLYVNSE SKLWEPTKGQ DLVTKIGPWG  360
GDSGTPNDLD VLPRRLMSVV VHNSTVINSL TFAYIDWDGQ QQTAGPWGWT PEPFDGKIDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-48371454113B3 domain-containing transcription factor NGA1
5os9_B5e-48371454113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_47091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193609.10.0uncharacterized protein LOC109779403
TrEMBLA0A287QDB40.0A0A287QDB4_HORVV; Uncharacterized protein
TrEMBLA0A287QDD20.0A0A287QDD2_HORVV; Uncharacterized protein
TrEMBLA0A287QDI10.0A0A287QDI1_HORVV; Uncharacterized protein
TrEMBLA0A287QDI60.0A0A287QDI6_HORVV; Uncharacterized protein
STRINGMLOC_47091.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2261944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-48B3 family protein