PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4657.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 682aa    MW: 76167.9 Da    PI: 7.682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4657.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18363462198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++++  e++lv+
  MLOC_4657.2 363 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSRID-PEGKLVM 458
                  89**************************555566778***************9989999999***9.********************987.6776777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  MLOC_4657.2 459 GFRK 462
                  7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-31359469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21360466IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-23361462No hitNo description
SMARTSM010199.3E-22363463IPR003340B3 DNA binding domain
PfamPF023621.6E-15363462IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265363464IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128620670IPR011124Zinc finger, CW-type
PfamPF074967.2E-11625667IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MHVCFFCFYV SSGSFEHGTF CETFHSEVAG WRKCEACGKR LHCGCIVSVH AYALLDAGGV  60
DCILCARKSY VAMAPSQMWS TPTVHMPQNV ADRKDSYVKS WRPPAGQISS QWRQNHQLWN  120
MSSIQTDLQQ RLAYEFDRPS GSEKLPPGRT FIHAQEKKSD DMHDRPTTPA GMGQIIRDRY  180
ANGLGQQTNM DPTHSSTPYQ REGPNQNSLH DPSHHVGESD PLSSRKGIVS DGGSTASTGF  240
KLDPHHPSIL KDDAASTLPT MGGYTITNYP PVPGRSDHLR IIPNNPQQPP TTVPVSVVQK  300
QFYSHSVIEP DYQAQFRNGK PRMESRMDAK ARSQLLPRYW PRITDKELQH LSGDSNSVIT  360
PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP PISQPEGLPL KVQDASGKEW VFQFRFWPNN  420
NSRMYVLEGV TPCIQSMHLQ AGDTVSFSRI DPEGKLVMGF RKTKTQEQIF RQEEPTKPAN  480
AAPNLPDVNV NVTAPDSSPN SALARPNKVN TENKDTSPVE QAAACKMEKT GVAQKEGQGT  540
VRSSPGPVKR KATSLGSKIK RFRIDNEESM ELKITWEEAQ ELLRPPLKAP SVVIVDGHEF  600
EEYEEPPVLG RKTYFVTDQS GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDPERT  660
TCVSPQEASM EQLAELIPIK AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643414622123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4657.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159271.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLM0WAJ60.0M0WAJ6_HORVV; Uncharacterized protein
STRINGMLOC_4657.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-122HSI2-like 1