PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4657.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 688aa    MW: 76872.6 Da    PI: 7.8112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4657.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18369468198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++++  e++lv+
  MLOC_4657.1 369 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSRID-PEGKLVM 464
                  89**************************555566778***************9989999999***9.********************987.6776777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  MLOC_4657.1 465 GFRK 468
                  7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-31364475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21366472IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-23367468No hitNo description
SMARTSM010199.3E-22369469IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265369470IPR003340B3 DNA binding domain
PfamPF023621.6E-15369468IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128626676IPR011124Zinc finger, CW-type
PfamPF074967.2E-11631673IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MHVCFFCFYV SSGSFEHGTF CETFHSEVAG WRKCEACGKR LHCGCIVSVH AYALLDAGGV  60
DCILCARKSY VAMAPSQMWS TPTVHMPQNV ADRKDSYVKS WRPPAGQISS QWRQNHQLWN  120
MSSIQTDLQQ RLAYEFDRPS GSEKLPPGRT FIHAQEKKSD DMHDRPTTPA GMGQIIRDRY  180
ANGLGQQTNM DPTHSSTPYQ REGPNQNSLH DPSHHVGESD PLSSRKGIVS DGGSTASTGF  240
KLDPHHPSIL KDDAASTLPT MGGYTITNYP PVPGRSDHLR IIPNNPQQPP TTVPVSVVQK  300
QFYSHSVIEP DYQAQFRNGK PRMESRMDAK ARSQLLPRYW PRITDKELQH LSGEYPKNST  360
SNSVITPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD ASGKEWVFQF  420
RFWPNNNSRM YVLEGVTPCI QSMHLQAGDT VSFSRIDPEG KLVMGFRKTK TQEQIFRQEE  480
PTKPANAAPN LPDVNVNVTA PDSSPNSALA RPNKVNTENK DTSPVEQAAA CKMEKTGVAQ  540
KEGQGTVRSS PGPVKRKATS LGSKIKRFRI DNEESMELKI TWEEAQELLR PPLKAPSVVI  600
VDGHEFEEYE EPPVLGRKTY FVTDQSGENH QWAQCEDCSK WRKLPVDALL PSKWTCSDNK  660
WDPERTTCVS PQEASMEQLA ELIPIKAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-623414682123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159212.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLM0WAJ60.0M0WAJ6_HORVV; Uncharacterized protein
STRINGMLOC_4657.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-124HSI2-like 1